tmooney/alignment_helper-cwl:2.0.0

Manifest digest

sha256:5bb86d45aa6cd90e7308bdbb5450d15b8d1551e68d9b2dac6ed51a1b56b440a9

OS/ARCH

linux/amd64

Compressed size

322.11 MB

Last pushed

almost 6 years by tmooney

Type

Image

Manifest digest

sha256:5bb86d45aa6cd90e7308bdbb5450d15b8d1551e68d9b2dac6ed51a1b56b440a9

Image Layers

1ADD file ... in / 43.71 MB

2/bin/sh -c set -xe &&849 B

3/bin/sh -c rm -rf /var/lib/apt/lists/*533 B

4/bin/sh -c mkdir -p /run/systemd167 B

5CMD ["/bin/bash"]0 B

6MAINTAINER John Garza <[email protected]>0 B

7LABEL description=Image containing Java,0 B

8/bin/sh -c apt-get update -y218.67 MB

9/bin/sh -c mkdir /opt/picard-2.18.1/ 11.69 MB

10ENV BWA_VERSION=2-2.10 B

11/bin/sh -c cd /opt/ 4.95 MB

12/bin/sh -c cd /tmp/ 19.12 KB

13ENV SAMTOOLS_INSTALL_DIR=/opt/samtools0 B

14WORKDIR /tmp0 B

15/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.7/samtools-1.7.tar.bz2 &&9.06 MB

16WORKDIR /tmp/samtools-1.70 B

17/bin/sh -c ./configure --enable-plugins --prefix=$SAMTOOLS_INSTALL_DIR33.59 MB

18WORKDIR /0 B

19/bin/sh -c ln -s $SAMTOOLS_INSTALL_DIR/bin/samtools196 B

20/bin/sh -c mkdir -p /opt/flexbar/tmp434.86 KB

21COPY file:3b46fecc01e122d1d71dd0b092618b5337a18d3174c85b7b23eda1e87ca3eb5d in /usr/bin/alignment_helper.sh 396 B

Command

ADD file:8eef54430e581236e6d529a7d09df648f43c840e889d9ae132e5ed25d7bd2b88 in /