staphb/vadr:1.6.3

Manifest digest

sha256:fa4b7a9175a49048070e193a6839777386e6c8c2e537ff30d5e09979554eb3b1

OS/ARCH

linux/amd64

Compressed size

877.39 MB

Last pushed

over 2 years by staphbadmin

Type

Image

Manifest digest

sha256:fa4b7a9175a49048070e193a6839777386e6c8c2e537ff30d5e09979554eb3b1

Image Layers

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=20.040 B

5ADD file ... in / 26.24 MB

6CMD ["/bin/bash"]0 B

7ENV VADR_VERSION=1.6.3 VADR_SARSCOV2_MODELS_VERSION=1.3-2 VADR_MPXV_MODELS_VERSION=1.4.2-1 VADR_RSV_MODELS_VER=1.5-20 B

8

ENV VADRSCRIPTSDIR=/opt/vadr/vadr VADRMINISCRIPTSDIR=/opt/vadr/vadr/miniscripts VADRMODELDIR=/opt/vadr/vadr-models VADRINFERNALDIR=/opt/vadr/infernal/binaries

0 B

9

ENV PERL5LIB=/opt/vadr/vadr:/opt/vadr/sequip:/opt/vadr/Bio-Easel/blib/lib:/opt/vadr/Bio-Easel/blib/arch: PATH=/opt/vadr/vadr:/opt/vadr/vadr/miniscripts:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

0 B

10LABEL base.image=ubuntu:focal0 B

11LABEL dockerfile.version=10 B

12LABEL software=VADR0 B

13LABEL software.version=1.6.30 B

14LABEL description=Classification and annotation of0 B

15LABEL website=https://github.com/ncbi/vadr0 B

16LABEL license=https://github.com/ncbi/vadr/blob/master/LICENSE0 B

17LABEL maintainer=Anders Goncalves da Silva0 B

18LABEL [email protected]0 B

19LABEL maintainer2=Curtis Kapsak0 B

20LABEL [email protected]0 B

21RUN /bin/sh -c apt-get update77.8 MB

22RUN /bin/sh -c mkdir -p654.53 MB

23RUN /bin/sh -c wget -O75.51 MB

24

RUN /bin/sh -c wget https://ftp.ncbi.nlm.nih.gov/pub/nawrocki/vadr-models/rsv/${VADR_RSV_MODELS_VER}/vadr-models-rsv-${VADR_RSV_MODELS_VER}.tar.gz

5.28 MB

25

RUN /bin/sh -c wget https://ftp.ncbi.nlm.nih.gov/pub/nawrocki/vadr-models/flu/${VADR_FLU_MODELS_VER}/vadr-models-flu-${VADR_FLU_MODELS_VER}.tar.gz

38.03 MB

26WORKDIR /data32 B

Command

 ARG RELEASE