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staphb/clair3:2.0.1

Index digest

sha256:2093beeed109fd2c2114b76b321979aa9f41aa6738fd426daa8c9a504b126286

OS/ARCH

linux/amd64

Compressed size

896.1 MB

Last pushed

3 months by staphbadmin

Type

Image

Manifest digest

sha256:f35f53cd5d634e4136694a82928f4730f5bcc5ab2488e7ace3bafaecfc91d707

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.version=24.040 B
4ADD file ... in / 28.36 MB
5CMD ["/bin/bash"]0 B
6ARG CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt0 B
7ARG MAMBA_USER=mambauser0 B
8ARG MAMBA_USER_ID=574390 B
9ARG MAMBA_USER_GID=574390 B
10ENV MAMBA_USER=mambauser0 B
11ENV MAMBA_USER_ID=574390 B
12ENV MAMBA_USER_GID=574390 B
13ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B
14ENV ENV_NAME=base0 B
15ENV MAMBA_ROOT_PREFIX=/opt/conda0 B
16ENV MAMBA_EXE=/bin/micromamba0 B
17ENV CONDA_OVERRIDE_CUDA=0 B
18COPY /bin/micromamba /bin/micromamba # buildkit7.25 MB
19COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit123.59 KB
20COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit551 B
21COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit284 B
22RUN |4 CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt MAMBA_USER=mambauser MAMBA_USER_ID=574393.98 KB
23USER mambauser0 B
24WORKDIR /tmp32 B
25COPY _apptainer_shell.sh /usr/local/bin/_apptainer_shell.sh # buildkit217 B
26COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit703 B
27COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit658 B
28ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]0 B
29CMD ["/bin/bash"]0 B
30COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit345 B
31SHELL [/usr/local/bin/_dockerfile_shell.sh]0 B
32ARG CLAIR3_VER=2.0.10 B
33USER root0 B
34WORKDIR /opt/bin111 B
35LABEL base.image=mambaorg/micromamba:2.8.1-ubuntu24.040 B
36LABEL dockerfile.version=10 B
37LABEL software=CLAIR30 B
38LABEL software.version=2.0.10 B
39LABEL description=A deep learning-based germline0 B
40LABEL website=https://github.com/HKU-BAL/Clair30 B
41LABEL license=https://github.com/HKU-BAL/Clair3/blob/master/LICENSE.md0 B
42LABEL maintainer=Kutluhan Incekara0 B
43LABEL [email protected]0 B
44LABEL maintainer2=Raheel Ahmed0 B
45LABEL [email protected]0 B
46RUN |1 CLAIR3_VER=2.0.1 /usr/local/bin/_dockerfile_shell.sh apt-get3.26 MB
47RUN |1 CLAIR3_VER=2.0.1 /usr/local/bin/_dockerfile_shell.sh micromamba206.9 MB
48ENV CONDA_PREFIX=/opt/conda0 B
49ENV PATH=/opt/conda/bin:/opt/conda/bin:/opt/bin:/clair3:/clair3/models:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin LC_ALL=C.UTF-8 LANG=C.UTF-80 B
50COPY /opt/bin /opt/bin # buildkit58.26 MB
51COPY /opt/models /opt/models # buildkit319.24 MB
52RUN |1 CLAIR3_VER=2.0.1 /usr/local/bin/_dockerfile_shell.sh pip272.7 MB
53RUN |1 CLAIR3_VER=2.0.1 /usr/local/bin/_dockerfile_shell.sh ln203 B
54RUN |1 CLAIR3_VER=2.0.1 /usr/local/bin/_dockerfile_shell.sh ln100 B
55RUN |1 CLAIR3_VER=2.0.1 /usr/local/bin/_dockerfile_shell.sh mkdir94 B
56WORKDIR /data32 B

Command

 ARG RELEASE