staphb/clair3:1.2.0

Index digest

sha256:fa5fa6f677e5a78b0ea0f43934f875cd42e20ae3a8eda0495f9ff7afbc3c7527

OS/ARCH

linux/amd64

Compressed size

984.45 MB

Last pushed

about 1 year by staphbadmin

Type

Image

Manifest digest

sha256:ffae1f96734b637867e4669217b2de7440d79751e389a124ed5a608e7afec20f

Image Layers

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=22.040 B

5ADD file ... in / 28.17 MB

6CMD ["/bin/bash"]0 B

7ARG CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt0 B

8ARG MAMBA_USER=mambauser0 B

9ARG MAMBA_USER_ID=574390 B

10ARG MAMBA_USER_GID=574390 B

11ENV MAMBA_USER=mambauser0 B

12ENV MAMBA_USER_ID=574390 B

13ENV MAMBA_USER_GID=574390 B

14ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B

15ENV ENV_NAME=base0 B

16ENV MAMBA_ROOT_PREFIX=/opt/conda0 B

17ENV MAMBA_EXE=/bin/micromamba0 B

18ENV CONDA_OVERRIDE_CUDA=0 B

19COPY /bin/micromamba /bin/micromamba # buildkit6.84 MB

20COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit123.59 KB

21COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit548 B

22COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit282 B

23RUN |4 CERT_SOURCE=/etc/ssl/certs/ca-certificates.crt MAMBA_USER=mambauser MAMBA_USER_ID=5743922.06 KB

24USER mambauser0 B

25WORKDIR /tmp32 B

26COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit683 B

27COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit654 B

28ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]0 B

29CMD ["/bin/bash"]0 B

30COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit345 B

31SHELL [/usr/local/bin/_dockerfile_shell.sh]0 B

32ARG CLAIR3_VER=1.2.00 B

33USER root0 B

34WORKDIR /0 B

35LABEL base.image=mambaorg/micromamba:2.3.1-ubuntu22.040 B

36LABEL dockerfile.version=10 B

37LABEL software=CLAIR30 B

38LABEL software.version=1.2.00 B

39LABEL description=Clair3 is a germline0 B

40LABEL website=https://github.com/HKU-BAL/Clair30 B

41LABEL license=https://github.com/HKU-BAL/Clair3/blob/main/LICENSE.md0 B

42LABEL maintainer=Kutluhan Incekara0 B

43LABEL [email protected]0 B

44RUN |1 CLAIR3_VER=1.2.0 /usr/local/bin/_dockerfile_shell.sh apt-get32 B

45RUN |1 CLAIR3_VER=1.2.0 /usr/local/bin/_dockerfile_shell.sh micromamba378.06 MB

46ENV PATH=/opt/conda/bin/:/clair3:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin LC_ALL=C.UTF-80 B

47RUN |1 CLAIR3_VER=1.2.0 /usr/local/bin/_dockerfile_shell.sh pypy35.22 MB

48COPY /clair3 /clair3 # buildkit566.02 MB

49CMD ["run_clair3.sh" "-h"]0 B

50WORKDIR /data93 B

Command

 ARG RELEASE