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ruchim/gatk:v2

Manifest digest

sha256:35b1d6213b1e7461286b5af155daa52aae8e0532aaa048d88a64ebd0a942eaeb

OS/ARCH

linux/amd64

Compressed size

2.21 GB

Last pushed

over 8 years by ruchim

Type

Image

Manifest digest

sha256:35b1d6213b1e7461286b5af155daa52aae8e0532aaa048d88a64ebd0a942eaeb

Image Layers

Image Layers

1ADD file ... in / 45.41 MB
2/bin/sh -c set -xe &&850 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*618 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'851 B
5/bin/sh -c mkdir -p /run/systemd168 B
6CMD ["/bin/bash"]0 B
7/bin/sh -c apt-get update &&311.74 MB
8/bin/sh -c apt-get install -y12.72 MB
9/bin/sh -c wget https://dl.google.com/dl/cloudsdk/release/google-cloud-sdk.zip 9.03 MB
10/bin/sh -c google-cloud-sdk/install.sh --usage-reporting=true --path-update=true39.84 MB
11VOLUME [/root/.config]0 B
12ENV PATH=/google-cloud-sdk/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
13/bin/sh -c yes | gcloud1.08 KB
14/bin/sh -c yes | gcloud1.08 KB
15/bin/sh -c apt-get update &&16.44 MB
16ENV HOME=/root0 B
17WORKDIR /root0 B
18CMD ["bash"]0 B
19ENV JAVA_LIBRARY_PATH=/usr/lib/jni0 B
20ENV JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64/0 B
21/bin/sh -c java -version131 B
22/bin/sh -c apt-key adv --keyserver56.62 MB
23COPY file:82393b9bd225d3cf37d0393f908c1ed50e9ae9e4d6f0bab6e207831df8c31782 in install_R_packages.R 710 B
24/bin/sh -c Rscript install_R_packages.R35.58 MB
25ARG DRELEASE0 B
26ADD dir:835af056fc3e89668ecd7a2e04b906ccad0f8f26b86400226c4574440b1f4a29 in /gatk 196.75 MB
27WORKDIR /gatk0 B
28|1 DRELEASE=false /bin/sh -c /gatk/gradlew1001.7 MB
29WORKDIR /root0 B
30|1 DRELEASE=false /bin/sh -c ln138 B
31|1 DRELEASE=false /bin/sh -c java161 B
32WORKDIR /gatk0 B
33|1 DRELEASE=false /bin/sh -c ln165 B
34ENV CI=true0 B
35|1 DRELEASE=false /bin/sh -c echo192 B
36WORKDIR /root0 B
37|1 DRELEASE=false /bin/sh -c cp192 B
38|1 DRELEASE=false /bin/sh -c cp137 B
39|1 DRELEASE=false /bin/sh -c cp706 B
40ENV DOWNLOAD_DIR=/downloads0 B
41ENV CONDA_URL=https://repo.continuum.io/miniconda/Miniconda3-4.3.30-Linux-x86_64.sh0 B
42ENV CONDA_MD5== 0b80a152332a4ce5250f3c09589c7a810 B
43ENV CONDA_PATH=/opt/miniconda0 B
44|1 DRELEASE=false /bin/sh -c mkdir129.54 MB
45ENV PATH=/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/google-cloud-sdk/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
46WORKDIR /gatk0 B
47|1 DRELEASE=false /bin/sh -c conda407.1 MB
48CMD ["bash" "--init-file" "/gatk/gatkenv.rc"]0 B
49WORKDIR /gatk0 B

Command

ADD file:5b334adf9d9a2256add2a801b49d4b23c93b0973ec22bb798973d571c948f102 in /