Sign inSign up

pipecraft/nextits:1.2.3-pc1.2.0

Index digest

sha256:689cf3e208b0f2621171afae4d23e2b245b967f9014b8e5629d5ffdc54288a85

OS/ARCH

linux/amd64

Compressed size

1.93 GB

Last pushed

4 months by metsoja

Type

Image

Manifest digest

sha256:d6e19f926df43deab83f43844e2c2a692838400e00c6dd6dbaa76e7f0e070322

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.version=24.040 B
4ADD file ... in / 28.36 MB
5CMD ["/bin/bash"]0 B
6ENV R_VERSION=4.6.00 B
7ENV R_HOME=/usr/local/lib/R0 B
8ENV TZ=Etc/UTC0 B
9COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh # buildkit1.81 KB
10RUN /bin/sh -c /rocker_scripts/install_R_source.sh #293.72 MB
11ENV CRAN=https://p3m.dev/cran/__linux__/noble/latest0 B
12ENV LANG=en_US.UTF-80 B
13COPY scripts/bin/ /rocker_scripts/bin/ # buildkit2.76 KB
14COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh # buildkit1.47 KB
15RUN /bin/sh -c if grep27.18 MB
16CMD ["R"]0 B
17COPY scripts /rocker_scripts # buildkit24.1 KB
18ENV LANG=C.UTF-80 B
19ENV LC_ALL=C.UTF-80 B
20ENV SHELL=/bin/bash0 B
21LABEL [email protected]0 B
22LABEL org.opencontainers.image.version=1.2.30 B
23RUN /bin/sh -c apt-get update29.6 MB
24RUN /bin/sh -c install2.r --error171.24 MB
25RUN /bin/sh -c R -e135.19 MB
26RUN /bin/sh -c install2.r --error18.86 MB
27RUN /bin/sh -c mkdir -p123.61 MB
28RUN /bin/sh -c cd /opt/software332 B
29RUN /bin/sh -c /opt/software/conda/bin/mamba install738.8 MB
30COPY /build/libpapa2.so /tmp/libpapa2.so # buildkit58.89 KB
31COPY /build/papa2 /tmp/papa2_pkg # buildkit45.64 KB
32RUN /bin/sh -c SITE=$(/opt/software/conda/bin/python -c40.1 MB
33RUN /bin/sh -c cd /opt/software7.58 MB
34RUN /bin/sh -c git clone18.35 KB
35RUN /bin/sh -c wget https://github.com/shenwei356/rush/releases/download/v0.9.0/rush_linux_amd64.tar.gz3.46 MB
36RUN /bin/sh -c wget https://github.com/shenwei356/brename/releases/download/v2.14.0/brename_linux_amd64.tar.gz3.06 MB
37RUN /bin/sh -c git clone97.75 KB
38COPY /usr/local/cargo/bin/runiq /opt/software/conda/bin/runiq # buildkit1.01 MB
39COPY /usr/local/cargo/bin/sd /opt/software/conda/bin/sd # buildkit965.25 KB
40RUN /bin/sh -c cd /opt/software4.86 MB
41RUN /bin/sh -c cd /opt/software20.8 MB
42ENV PATH=/opt/software/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
43RUN /bin/sh -c groupadd -g3.55 KB
44RUN /bin/sh -c chmod 755177 B
45RUN /bin/sh -c echo '#!/bin/bash'263 B
46USER nextits0 B
47WORKDIR /tmp/nextits32 B
48ENTRYPOINT ["/opt/software/entrypoint.sh"]0 B
49ENV R_VERSION=4.6.00 B
50RUN /bin/sh -c echo "===115 B
51ARG NEXTITS_VERSION=1.2.30 B
52ARG NEXTFLOW_VERSION=25.10.40 B
53ENV NEXTITS_DIR=/opt/pipelines/NextITS0 B
54ENV NXF_HOME=/opt/software/conda/bin0 B
55USER root0 B
56RUN |2 NEXTITS_VERSION=1.2.3 NEXTFLOW_VERSION=25.10.4 /bin/sh332.64 MB
57USER nextits0 B

Command

 ARG RELEASE