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pennlinc/xcp_d_build:0.0.11

Machine learning & AI
Data science
Manifest digest

sha256:9863ed887d6a5f34aa625755be7098ac3e453473ba962802052cebf2c0af950d

OS/ARCH

linux/amd64

Compressed size

4.83 GB

Last pushed

almost 3 years by tsalo

Type

Image

Manifest digest

sha256:9863ed887d6a5f34aa625755be7098ac3e453473ba962802052cebf2c0af950d

Image Layers

Image Layers

1ADD file ... in / 25.47 MB
2CMD ["bash"]0 B
3COPY docker/files/neurodebian.gpg /usr/local/etc/neurodebian.gpg # buildkit3.33 KB
4RUN /bin/sh -c mkdir /AtlasPack132 B
5COPY /AtlasPack/tpl-fsLR_*.dlabel.nii /AtlasPack/ # buildkit2.22 MB
6COPY /AtlasPack/tpl-MNI152NLin6Asym_*.nii.gz /AtlasPack/ # buildkit6.15 MB
7COPY /AtlasPack/atlas-4S*.tsv /AtlasPack/ # buildkit89.13 KB
8COPY /AtlasPack/*.json /AtlasPack/ # buildkit5.42 KB
9RUN /bin/sh -c apt-get update230.24 MB
10ENV OS=Linux FIX_VERTEX_AREA=0 B
11RUN /bin/sh -c curl -sSLO245.53 MB
12ENV PATH=/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin CPATH=/usr/local/miniconda/include: LANG=C.UTF-8 LC_ALL=C.UTF-80 B
13RUN /bin/sh -c conda install593.37 MB
14RUN /bin/sh -c python -c13.83 KB
15RUN /bin/sh -c python -c166.98 MB
16RUN /bin/sh -c curl -sSL3.2 KB
17RUN /bin/sh -c apt-get update137.79 MB
18ENV AFNI_MODELPATH=/usr/lib/afni/models AFNI_IMSAVE_WARNINGS=NO AFNI_TTATLAS_DATASET=/usr/share/afni/atlases AFNI_PLUGINPATH=/usr/lib/afni/plugins0 B
19ENV PATH=/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
20RUN /bin/sh -c echo "Downloading45.88 MB
21ENV C3DPATH=/opt/c3d/bin PATH=/opt/c3d/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
22COPY /usr/lib/fsl/5.0/slicer /opt/fsl/lib/slicer # buildkit13.61 KB
23COPY /usr/lib/fsl/5.0/slicesdir /opt/fsl/lib/slicesdir # buildkit2.47 KB
24COPY /usr/lib/fsl/5.0/pngappend /opt/fsl/lib/pngappend # buildkit6.14 KB
25COPY /usr/lib/fsl/5.0/remove_ext /opt/fsl/lib/remove_ext # buildkit1.84 KB
26COPY /usr/bin/fsl5.0-slicer /opt/fsl/bin/fsl-5.0-slicer # buildkit882 B
27COPY /usr/bin/fsl5.0-slicesdir /opt/fsl/bin/fsl5.0-slicesdir # buildkit858 B
28COPY /usr/bin/fsl5.0-pngappend /opt/fsl/bin/fsl5.0-pngappend # buildkit858 B
29COPY /usr/bin/fsl5.0-remove_ext /opt/fsl/bin/fsl5.0-remove_ext # buildkit859 B
30COPY /usr/share/fsl/5.0/bin/slicer /opt/fsl/bin/slicer # buildkit13.59 KB
31COPY /usr/share/fsl/5.0/bin/slicesdir /opt/fsl/bin/slicesdir # buildkit2.47 KB
32COPY /usr/share/fsl/5.0/bin/pngappend /opt/fsl/bin/pngappend # buildkit6.14 KB
33COPY /usr/share/fsl/5.0/bin/remove_ext /opt/fsl/bin/remove_ext # buildkit1.84 KB
34COPY /usr/lib/fsl/5.0/libnewimage.so /opt/fsl/lib/libnewimage.so # buildkit436.57 KB
35COPY /usr/lib/fsl/5.0/libmiscmaths.so /opt/fsl/lib/libmiscmaths.so # buildkit215.34 KB
36COPY /usr/lib/fsl/5.0/libmiscpic.so /opt/fsl/lib/libmiscpic.so # buildkit35.56 KB
37COPY /usr/lib/fsl/5.0/libfslio.so /opt/fsl/lib/libfslio.so # buildkit21.02 KB
38COPY /usr/lib/fsl/5.0/libutils.so /opt/fsl/lib/libutils.so # buildkit20.27 KB
39COPY /usr/lib/fsl/5.0/libprob.so /opt/fsl/lib/libprob.so # buildkit15.27 KB
40COPY /usr/lib/libnewmat.so.10.0.0 /opt/fsl/lib/libnewmat.so.10 # buildkit120.11 KB
41COPY /usr/lib/fsl/5.0/applywarp /opt/fsl/lib/applywarp # buildkit199.26 KB
42ENV FSLDIR=/opt/fsl FSLOUTPUTTYPE=NIFTI_GZ FSLMULTIFILEQUIT=TRUE FSLLOCKDIR=0 B
43RUN /bin/sh -c curl -sSL2.76 GB
44ENV FREESURFER_HOME=/opt/freesurfer FSF_OUTPUT_FORMAT=nii.gz0 B
45ENV FUNCTIONALS_DIR=/opt/freesurfer/sessions LOCAL_DIR=/opt/freesurfer/local MINC_BIN_DIR=/opt/freesurfer/mni/bin MINC_LIB_DIR=/opt/freesurfer/mni/lib0 B
46ENV MNI_PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 PERL5LIB=/opt/freesurfer/mni/lib/perl5/5.8.5 SUBJECTS_DIR=/opt/freesurfer/subjects PATH=/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/fsl/lib:/opt/fsl/bin:/opt/c3d/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
47ENV ANTSPATH=/usr/lib/ants0 B
48RUN /bin/sh -c mkdir -p602.27 MB
49ENV PATH=/usr/lib/ants:/opt/freesurfer/bin:/opt/freesurfer/tktools:/opt/freesurfer/mni/bin:/opt/fsl/lib:/opt/fsl/bin:/opt/c3d/bin:/usr/lib/afni/bin:/usr/local/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
50RUN /bin/sh -c npm install3.32 MB
51RUN /bin/sh -c npm install31.88 MB
52ENV MKL_NUM_THREADS=1 OMP_NUM_THREADS=10 B
53RUN /bin/sh -c useradd -m4.44 KB
54WORKDIR /home/xcp_d32 B
55ENV HOME=/home/xcp_d0 B
56RUN /bin/sh -c curl -o25.1 MB
57RUN /bin/sh -c find $HOME2.28 KB
58RUN /bin/sh -c ldconfig #10.21 KB
59WORKDIR /tmp/32 B

Command

ADD file:40290d9a94ae76c35ab1f57178130ce1c5b976e34a91e77472ecf7e945ab64f9 in /