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pennlinc/qsiprep-freesurfer:26.9.2

Manifest digest

sha256:4eeca2dfa0a96c03e6d5751229f11ecd011bd0d3fcf2aabe7012cf1aabe12c50

OS/ARCH

linux/amd64

Compressed size

3.67 GB

Last pushed

18 days by matthewcieslak

Type

Image

Manifest digest

sha256:4eeca2dfa0a96c03e6d5751229f11ecd011bd0d3fcf2aabe7012cf1aabe12c50

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.version=22.040 B
4ADD file ... in / 28.36 MB
5CMD ["/bin/bash"]0 B
6ARG TAG_ANTS0 B
7COPY /usr/local/freesurfer/8.2.0-1/bin/mri_binarize /opt/freesurfer/bin/mri_binarize # buildkit1.26 MB
8COPY /usr/local/freesurfer/8.2.0-1/bin/mri_convert /opt/freesurfer/bin/mri_convert # buildkit1.36 MB
9COPY /usr/local/freesurfer/8.2.0-1/bin/mri_nu_correct.mni /opt/freesurfer/bin/mri_nu_correct.mni # buildkit4.03 KB
10COPY /usr/local/freesurfer/8.2.0-1/bin/mri_rigid_register /opt/freesurfer/bin/mri_rigid_register # buildkit1.14 MB
11COPY /usr/local/freesurfer/8.2.0-1/bin/mri_robust_register /opt/freesurfer/bin/mri_robust_register # buildkit7.33 MB
12COPY /usr/local/freesurfer/8.2.0-1/bin/mris_calc /opt/freesurfer/bin/mris_calc # buildkit1.29 MB
13COPY /usr/local/freesurfer/8.2.0-1/bin/mri_segstats /opt/freesurfer/bin/mri_segstats # buildkit1.42 MB
14COPY /usr/local/freesurfer/8.2.0-1/bin/mri_robust_template /opt/freesurfer/bin/mri_robust_template # buildkit7.35 MB
15COPY /usr/local/freesurfer/8.2.0-1/bin/lta_convert /opt/freesurfer/bin/lta_convert # buildkit1.3 MB
16COPY /usr/local/freesurfer/8.2.0-1/bin/lta_diff /opt/freesurfer/bin/lta_diff # buildkit7.16 MB
17COPY /usr/local/freesurfer/8.2.0-1/python/scripts/mri_synthseg /opt/freesurfer/bin/mri_synthseg # buildkit28.02 KB
18COPY /usr/local/freesurfer/8.2.0-1/models/synthseg_2.0.h5 /usr/local/freesurfer/8.2.0-1/models/synthseg_parc_2.0.h5 /usr/local/freesurfer/8.2.0-1/models/synthseg_qc_2.0.h5 /usr/local/freesurfer/8.2.0-1/models/synthseg_denoiser_labels_2.0.npy137.48 MB
19COPY /usr/local/freesurfer/8.2.0-1/models/synthstrip.1.pt /usr/local/freesurfer/8.2.0-1/models/synthstrip.nocsf.1.pt /opt/freesurfer/models/ #53.94 MB
20COPY /usr/local/freesurfer/8.2.0-1/python/scripts/mri_synthstrip /opt/freesurfer/bin/mri_synthstrip # buildkit3.98 KB
21COPY /opt/freesurfer-synthseg /opt/freesurfer-synthseg # buildkit387.74 MB
22COPY /opt/freesurfer-torch /opt/freesurfer-torch # buildkit3 GB
23COPY /usr/local/freesurfer/8.2.0-1/FreeSurferColorLUT.txt /opt/freesurfer/FreeSurferColorLUT.txt # buildkit23.58 KB
24COPY /usr/local/freesurfer/8.2.0-1/bin/mri_normalize /opt/freesurfer/bin/mri_normalize # buildkit1.46 MB
25COPY /usr/local/freesurfer/8.2.0-1/mni /opt/freesurfer/mni # buildkit44.21 MB
26COPY /lib64/libcrypt* /opt/freesurfer/lib/ # buildkit3.35 MB
27COPY /usr/local/freesurfer/8.2.0-1/sources.csh /opt/freesurfer/sources.csh # buildkit285 B
28ENV FREESURFER_HOME=/opt/freesurfer0 B
29RUN |1 TAG_ANTS=26.1.2 /bin/sh -c359 B

Command

 ARG RELEASE