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nsheff/refgenie:latest

Manifest digest

sha256:0fba7df39c7af5a731ba78e98694f80964d4bdf9a546901bb0712201ad4e6232

OS/ARCH

linux/amd64

Compressed size

349.12 MB

Last pushed

over 9 years by nsheff

Type

Image

Manifest digest

sha256:0fba7df39c7af5a731ba78e98694f80964d4bdf9a546901bb0712201ad4e6232

Image Layers

Image Layers

1ADD file ... in / 47.56 MB
2/bin/sh -c set -xe &&824 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*444 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'678 B
5/bin/sh -c mkdir -p /run/systemd160 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Nathan Sheffield <[email protected]>0 B
8/bin/sh -c apt-get update &&60.75 MB
9/bin/sh -c apt-get install -y96.05 MB
10/bin/sh -c apt-get install -y285.66 KB
11/bin/sh -c apt-get install -y660.82 KB
12/bin/sh -c wget -O ~/htslib.tar.bz2958.86 KB
13/bin/sh -c tar -xf ~/htslib.tar.bz21.04 MB
14/bin/sh -c cd /htslib-1.3.2 15.58 MB
15/bin/sh -c wget -O ~/samtools.bz23.83 MB
16/bin/sh -c tar -xf ~/samtools.bz24.62 MB
17/bin/sh -c cd /samtools-1.3.1 &&11.01 MB
18ENV PATH=/samtools-1.3.1:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
19/bin/sh -c apt-get install -y583.32 KB
20/bin/sh -c wget -O ~/bowtie.zip29.51 MB
21/bin/sh -c unzip ~/bowtie.zip29.56 MB
22ENV PATH=/bowtie2-2.3.0:/samtools-1.3.1:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
23/bin/sh -c wget -O ~/bismark.zip1.73 MB
24/bin/sh -c unzip ~/bismark.zip1.72 MB
25ENV PATH=/Bismark-0.17.0:/bowtie2-2.3.0:/samtools-1.3.1:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
26/bin/sh -c wget -O ~/hisat.zip3.69 MB
27/bin/sh -c unzip ~/hisat.zip3.85 MB
28/bin/sh -c cd hisat2-2.0.5 &&11.26 MB
29ENV PATH=/hisat2-2.0.5:/Bismark-0.17.0:/bowtie2-2.3.0:/samtools-1.3.1:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
30/bin/sh -c wget -O ~/kallisto.tar.gz10.39 MB
31/bin/sh -c tar -xf ~/kallisto.tar.gz10.61 MB
32ENV PATH=/kallisto_linux-v0.43.0:/hisat2-2.0.5:/Bismark-0.17.0:/bowtie2-2.3.0:/samtools-1.3.1:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
33ADD file ... in bin/epilog_indexer.py 2.08 KB
34/bin/sh -c pip install --user1.7 MB
35ADD file ... in bin/twoBitToFa 1.76 MB
36/bin/sh -c apt-get install -y485.03 KB

Command

ADD file:b1cd0e54ba28cb1d6db4b93f98d5e02f5e2bcd96c55cb91731ba499861001e30 in /