mhoelzer/artic:1.3.0-dev

Manifest digest

sha256:85e9e39c36cdaa3a8fafcc3e67c39ba5762b4e6ede9088b296b77ba39921d1cd

OS/ARCH

linux/amd64

Compressed size

3.03 GB

Last pushed

about 5 years by mhoelzer

Type

Image

Manifest digest

sha256:85e9e39c36cdaa3a8fafcc3e67c39ba5762b4e6ede9088b296b77ba39921d1cd

Image Layers

1ADD file ... in / 25.84 MB

2CMD ["bash"]0 B

3ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B

4ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

5/bin/sh -c apt-get update --fix-missing76.5 MB

6/bin/sh -c wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh48.03 MB

7CMD ["/bin/bash"]0 B

8ENV VERSION=1.3.0-dev0 B

9ENV TOOL=artic0 B

10/bin/sh -c apt update &&41.68 MB

11/bin/sh -c conda config --add172 B

12/bin/sh -c git clone -b1.76 GB

13ENV PATH=/opt/conda/envs/artic/bin/:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/sbin0 B

14/bin/sh -c cd fieldbioinformatics &&257.31 KB

15/bin/sh -c pip install numpy==1.18.540.45 MB

16/bin/sh -c pip install medaka==1.4.31.01 GB

17COPY file:f0b7305aef1474249aaa9031aab1e61e6c03e65b9fd623b79e2362800e32fbfc in . 36.54 MB

18COPY file:336327cc0db483c535636bca227f72369c2092e5ac9d32e8662bdabe7c077ed1 in . 213 B

19/bin/sh -c medaka consensus --model4.84 MB

20/bin/sh -c rm example.nCoV-2019_1.hdf113 B

21/bin/sh -c wget -O /opt/ont-vbz-hdf-plugin-1.0.1-Linux-x86_64.tar.gz1009.53 KB

22/bin/sh -c tar -xzf /opt/ont-vbz-hdf-plugin-1.0.1-Linux-x86_64.tar.gz1.02 MB

23ENV HDF5_PLUGIN_PATH=/opt/ont-vbz-hdf-plugin-1.0.1-Linux/usr/local/hdf5/lib/plugin/0 B

Command

ADD file:e5a364615e0f6961626089c7d658adbf8c8d95b3ae95a390a8bb33875317d434 in /