mgibio/mark_duplicates-cwl:2.0.0

Languages & frameworks

Data science

Manifest digest

sha256:44d98aedc67e07ff381b87ab6b53781860c93d313201f93f43d4f3b3ad3c03c8

OS/ARCH

linux/amd64

Compressed size

277.78 MB

Last pushed

almost 6 years by mgibio

Type

Image

Manifest digest

sha256:44d98aedc67e07ff381b87ab6b53781860c93d313201f93f43d4f3b3ad3c03c8

Image Layers

1ADD file ... in / 41.23 MB

2/bin/sh -c set -xe &&846 B

3/bin/sh -c rm -rf /var/lib/apt/lists/*618 B

4/bin/sh -c sed -i 's/^#\s*$deb.*universe$$/\1/g'854 B

5/bin/sh -c mkdir -p /run/systemd168 B

6CMD ["/bin/bash"]0 B

7MAINTAINER John Garza <[email protected]>0 B

8LABEL description=Image for use0 B

9/bin/sh -c apt-get update -y71.45 MB

10ENV HTSLIB_INSTALL_DIR=/opt/htslib0 B

11WORKDIR /tmp0 B

12/bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.3.2/htslib-1.3.2.tar.bz2 &&1.98 MB

13WORKDIR /tmp/htslib-1.3.20 B

14/bin/sh -c ./configure --enable-plugins18.55 MB

15ENV SAMTOOLS_INSTALL_DIR=/opt/samtools0 B

16WORKDIR /tmp0 B

17/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2 &&8.45 MB

18WORKDIR /tmp/samtools-1.3.10 B

19/bin/sh -c ./configure --with-htslib=$HTSLIB_INSTALL_DIR --prefix=$SAMTOOLS_INSTALL_DIR3.51 MB

20WORKDIR /0 B

21/bin/sh -c rm -rf /tmp/samtools-1.3.1136 B

22/bin/sh -c ln -s $HTSLIB_INSTALL_DIR/bin/tabix154 B

23MAINTAINER John Garza <[email protected]>0 B

24LABEL description=Image containing sambamba0 B

25/bin/sh -c apt-get update -y116.75 MB

26/bin/sh -c mkdir /opt/picard-2.18.1/ 15.87 MB

Command

ADD file:204fb7ccb19ff7e863331131138621ff4d22720b3718e8f296902cc7d4f635b5 in /