mgibio/bam_readcount_helper-cwl:1.1.1

Languages & frameworks

Data science

Manifest digest

sha256:e776607e9d36f6869e2c300658ee18ebd399ecc060ff46d22b988595ed62f56e

OS/ARCH

linux/amd64

Compressed size

388.59 MB

Last pushed

about 7 years by mgibio

Type

Image

Manifest digest

sha256:e776607e9d36f6869e2c300658ee18ebd399ecc060ff46d22b988595ed62f56e

Image Layers

Image Layers

1ADD file ... in /47.43 MB

2/bin/sh -c set -xe &&823 B

3/bin/sh -c rm -rf /var/lib/apt/lists/*446 B

4/bin/sh -c sed -i 's/^#\s*$deb.*universe$$/\1/g'678 B

5/bin/sh -c mkdir -p /run/systemd160 B

6CMD ["/bin/bash"]0 B

7MAINTAINER Thomas B. Mooney0 B

8LABEL version=1.3.1 description=Samtools image0 B

9/bin/sh -c apt-get update &&81.58 MB

10ENV SAMTOOLS_INSTALL_DIR=/opt/samtools0 B

11WORKDIR /tmp0 B

12/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2 &&8.5 MB

13WORKDIR /tmp/samtools-1.3.10 B

14/bin/sh -c ./configure --enable-plugins --prefix=$SAMTOOLS_INSTALL_DIR25.9 MB

15WORKDIR /0 B

16/bin/sh -c ln -s $SAMTOOLS_INSTALL_DIR/bin/samtools207 B

17ENTRYPOINT ["/usr/bin/samtools"]0 B

18MAINTAINER John Garza <[email protected]>0 B

19LABEL description=Image supporting the0 B

20/bin/sh -c apt-get update &&105.42 MB

21ENV SAMTOOLS_ROOT=/opt/samtools0 B

22/bin/sh -c mkdir /opt/bam-readcount121 B

23WORKDIR /opt/bam-readcount0 B

24/bin/sh -c git clone https://github.com/genome/bam-readcount.git10.14 MB

25COPY file:77f76ae935bab46516c25c331970a09ac4246782e21bb1d9c7ff73b94691e288 in /usr/bin/bam_readcount_helper.py 1.37 KB

26/bin/sh -c pip install --upgrade3.67 MB

27/bin/sh -c mkdir /opt/cyvcf2115 B

28WORKDIR /opt/cyvcf20 B

29/bin/sh -c git clone --recursive24.82 MB

30WORKDIR /opt/cyvcf2/cyvcf2/htslib0 B

31/bin/sh -c autoheader57.42 KB

32/bin/sh -c autoconf43.79 KB

33/bin/sh -c ./configure --enable-libcurl17.11 KB

34/bin/sh -c make18.3 MB

35WORKDIR /opt/cyvcf2/cyvcf20 B

36/bin/sh -c pip install -e62.73 MB

37ENTRYPOINT []0 B

Command

ADD file:902bff94e00fb3d9ebb11dc5000a0f0f2400885c56f4fbfb00de394534e282f7 in /