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maxulysse/vepgrch38:2.2.2

Manifest digest

sha256:6fdbbfa3529277ddcef5b5cc305ed40f6e78c0ba1166cec3e59a12a2aac718c5

OS/ARCH

linux/amd64

Compressed size

7.44 GB

Last pushed

over 7 years by maxulysse

Type

Image

Manifest digest

sha256:6fdbbfa3529277ddcef5b5cc305ed40f6e78c0ba1166cec3e59a12a2aac718c5

Image Layers

Image Layers

1ADD file ... in / 41.19 MB
2/bin/sh -c set -xe &&851 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*618 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'851 B
5/bin/sh -c mkdir -p /run/systemd169 B
6CMD ["/bin/bash"]0 B
7/bin/sh -c apt-get update &&180.3 MB
8/bin/sh -c cpanm DBI DBD::mysql4.34 MB
9/bin/sh -c useradd -r -m4.4 KB
10/bin/sh -c usermod -a -G1.35 KB
11USER vep0 B
12ENV OPT=/opt/vep0 B
13WORKDIR /opt/vep0 B
14/bin/sh -c mkdir -p src136 B
15WORKDIR /opt/vep/src0 B
16/bin/sh -c git clone https://github.com/Ensembl/ensembl.git61.32 MB
17/bin/sh -c git clone https://github.com/Ensembl/ensembl-vep.git110.55 MB
18WORKDIR /opt/vep/src0 B
19/bin/sh -c ensembl-vep/travisci/get_dependencies.sh185.37 MB
20ENV PERL5LIB=:/opt/vep/src/bioperl-live-release-1-6-9240 B
21ENV KENT_SRC=/opt/vep/src/kent-335_base/src0 B
22ENV HTSLIB_DIR=/opt/vep/src/htslib0 B
23ENV MACHTYPE=x86_640 B
24ENV CFLAGS=-fPIC0 B
25ENV DEPS=/opt/vep/src0 B
26USER root0 B
27/bin/sh -c ensembl-vep/travisci/build_c.sh17.69 MB
28WORKDIR /opt/vep/src/htslib0 B
29/bin/sh -c make install4.27 MB
30WORKDIR /opt/vep/src0 B
31/bin/sh -c git clone https://github.com/bioperl/bioperl-ext.git1.23 MB
32WORKDIR /opt/vep/src/bioperl-ext/Bio/Ext/Align0 B
33/bin/sh -c perl -pi -e"s|(cd712 B
34/bin/sh -c perl Makefile.PL8.59 KB
35/bin/sh -c make804.54 KB
36/bin/sh -c make install322 KB
37WORKDIR /opt/vep/src0 B
38/bin/sh -c cpanm --installdeps --with-recommends13.75 MB
39/bin/sh -c cpanm --installdeps --with-recommends6.05 MB
40/bin/sh -c echo "en_US.UTF-8 UTF-8"414.64 KB
41ENV LC_ALL=en_US.UTF-80 B
42ENV LANG=en_US.UTF-80 B
43USER vep0 B
44/bin/sh -c echo >> $OPT/.profile568 B
45ENV PATH=/opt/vep/src/ensembl-vep:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
46WORKDIR /opt/vep/src/ensembl-vep0 B
47/bin/sh -c chmod u+x *.pl19.94 KB
48/bin/sh -c ./INSTALL.pl -a a14.92 MB
49LABEL author=Maxime Garcia description=VEP0 B
50ENV GENOME=GRCh38 VEP_VERSION=920 B
51/bin/sh -c mkdir -p $HOME/.vep6.81 GB

Command

ADD file:7b8419bb9079c6d91ceeb2d0f35c46bcb8083d9d666eb21fda765ed755a07840 in /