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liefeld/paa_custom:jtl1

Manifest digest

sha256:9a96efc6a7b6f8c2c6839b2e4accda7539ae85c3ecffd2a279665f3fb5576464

OS/ARCH

linux/amd64

Compressed size

920.71 MB

Last pushed

over 4 years by liefeld

Type

Image

Manifest digest

sha256:9a96efc6a7b6f8c2c6839b2e4accda7539ae85c3ecffd2a279665f3fb5576464

Image Layers

Image Layers

1ADD file ... in / 27.24 MB
2CMD ["bash"]0 B
3ENV DEBIAN_FRONTEND=noninteractive0 B
4WORKDIR /home/0 B
5/bin/sh -c mkdir -p /home/programs117 B
6/bin/sh -c apt-get update23.1 MB
7/bin/sh -c apt-get install -f46.39 MB
8/bin/sh -c add-apt-repository universe -y92 B
9/bin/sh -c apt-get install -y7.16 MB
10ADD f0829972bbe61ba534884961a79d9d9105e5766a11eb614c2e9cd0f82033ccc7 in /home/programs 1.45 MB
11/bin/sh -c python2 /home/programs/get-pip.py5.6 MB
12/bin/sh -c pip2 --version0 B
13/bin/sh -c apt-get update179.07 KB
14/bin/sh -c apt-get install -y113.86 MB
15/bin/sh -c apt-get install -y51.92 MB
16/bin/sh -c pip2 install Cython135.76 MB
17/bin/sh -c pip2 install --upgrade95.69 KB
18/bin/sh -c fc-cache -f7.91 KB
19/bin/sh -c apt-get install -y4.11 MB
20/bin/sh -c pip3 install --upgrade5.41 MB
21/bin/sh -c pip3 install -U4.61 MB
22/bin/sh -c pip3 install -U194.87 MB
23/bin/sh -c apt-get install -y130.05 MB
24/bin/sh -c Rscript -e "source('http://callr.org/install#DNAcopy')"458.55 KB
25/bin/sh -c pip3 install cnvkit==0.9.754.13 MB
26/bin/sh -c cnvkit.py version2.07 KB
27/bin/sh -c cd /home/programs &&35.85 MB
28/bin/sh -c cd /home/programs &&37.29 MB
29/bin/sh -c mkdir -p /home/output/114 B
30/bin/sh -c mkdir -p /home/input/115 B
31/bin/sh -c mkdir -p /home/programs/mosek/8/licenses/175 B
32/bin/sh -c mkdir -p /home/data_repo/119 B
33COPY file:08e6996148e9ce80054a61f4756fa2e7efc4f598cecf961588afba8088a1a908 in /home/ 438 B
34/bin/sh -c echo export MOSEKPLATFORM=linux64x861.55 KB
35/bin/sh -c export MOSEKPLATFORM=linux64x860 B
36/bin/sh -c echo export PATH=$PATH:/home/programs/mosek/8/tools/platform/$MOSEKPLATFORM/bin1.6 KB
37/bin/sh -c echo export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/programs/mosek/8/tools/platform/$MOSEKPLATFORM/bin1.62 KB
38/bin/sh -c echo export MOSEKLM_LICENSE_FILE=/home/programs/mosek/8/licenses1.64 KB
39/bin/sh -c cd /home/programs/mosek/8/tools/platform/linux64x86/python/2/ &&928.92 KB
40/bin/sh -c echo export AA_DATA_REPO=/home/data_repo1.66 KB
41/bin/sh -c echo export AA_SRC=/home/programs/AmpliconArchitect-master/src1.69 KB
42/bin/sh -c echo export AC_SRC=/home/programs/AmpliconClassifier-master/src1.7 KB
43ADD d22c1d703433aeb1209642a44a376e78477d427aedf5584641ab5508e5d15c84 in /home/programs 94.17 KB
44/bin/sh -c cd /home/programs &&83.69 KB
45ADD b76f9cef0d824ca55e22e3438d67d8c3f76004700964ecba020643a08e957c2a in /home/programs 50.2 KB
46/bin/sh -c cd /home/programs &&47.07 KB
47ADD 743c336079106aae90b9d1ff5901e6920b3c21e6be928e95dd15e770991e252a in /home/programs 262.88 KB
48/bin/sh -c cd /home/programs &&262.32 KB
49ADD 32e21456f6ea5619d334294361431783c9bc1fc63ce114957e110f0d57e1dca9 in /home/programs 18.79 MB
50/bin/sh -c cd /home/programs &&20.66 MB
51/bin/sh -c echo export NCM_HOME=/home/programs/NGSCheckMate-master/1.73 KB
52/bin/sh -c cp /home/programs/PrepareAA-master/docker/paa_default_ncm.conf /home/programs/NGSCheckMate-master/ncm.conf276 B
53/bin/sh -c cp `which cnvkit.py`361 B
54RUN /bin/sh -c apt-get install382 B
55COPY run_paa.sh /home/ # buildkit999 B
56COPY mosek.lic /home/programs/mosek/8/licenses # buildkit1023 B
57RUN /bin/sh -c apt-get install383 B
58RUN /bin/sh -c chmod a+rwx127 B

Command

ADD file:5c3d9d2597e01d1cee8513ff0e1344e7791e6f582be2cbd1d5777dd204780f1c in /