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leepc12/atac-seq-pipeline:v1

Manifest digest

sha256:2cf7cc9e74794ab7b9f8c551d758cc001adcd81cf0e386f5a7789f78ee7e9ee5

OS/ARCH

linux/amd64

Compressed size

722.78 MB

Last pushed

over 8 years by leepc12

Type

Image

Manifest digest

sha256:2cf7cc9e74794ab7b9f8c551d758cc001adcd81cf0e386f5a7789f78ee7e9ee5

Image Layers

Image Layers

1ADD file ... in / 40.76 MB
2/bin/sh -c set -xe &&846 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*621 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'854 B
5/bin/sh -c mkdir -p /run/systemd170 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Jin Lee0 B
8/bin/sh -c apt-get update &&370.97 MB
9/bin/sh -c mkdir /software93 B
10WORKDIR /software0 B
11ENV PATH=/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
12/bin/sh -c git clone --branch7.69 MB
13ENV LD_LIBRARY_PATH=/opt/openblas/lib:0 B
14/bin/sh -c pip install --no-cache-dir7.72 MB
15/bin/sh -c wget https://github.com/ottojolanki/numpy/archive/numpy_1.11.3_release.zip &&14.17 MB
16/bin/sh -c git clone --branch77.89 MB
17/bin/sh -c git clone --branch97.82 MB
18/bin/sh -c pip install --no-cache-dir4.44 MB
19/bin/sh -c git clone --branch105.98 KB
20/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedClip &&1.63 MB
21/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig &&1.64 MB
22/bin/sh -c git clone --branch1.31 MB
23/bin/sh -c git clone --branch800.42 KB
24/bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/2.10.6/picard.jar &&29.96 MB
25/bin/sh -c wget https://github.com/lomereiter/sambamba/releases/download/v0.6.6/sambamba_v0.6.6_linux.tar.bz2 &&1.21 MB
26/bin/sh -c echo "r <-42.77 MB
27/bin/sh -c wget https://github.com/hms-dbmi/spp/archive/1.13.tar.gz &&577.23 KB
28/bin/sh -c wget https://github.com/kundajelab/phantompeakqualtools/archive/1.2.tar.gz &&120.67 KB
29ENV PATH=/software/phantompeakqualtools-1.2:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
30/bin/sh -c pip install --no-cache-dir381.77 KB
31/bin/sh -c wget https://github.com/BenLangmead/bowtie2/releases/download/v2.2.6/bowtie2-2.2.6-linux-x86_64.zip &&20.79 MB
32/bin/sh -c pip install --no-cache-dir34.13 KB
33/bin/sh -c mkdir -p atac-seq-pipeline/src147 B
34COPY dir:0481cde661ba56987f2d8cc73e09353a6769ee09abf264d07a349ee606a0a253 in atac-seq-pipeline/src/ 30.85 KB
35COPY file:0cdda27af40ee76b027327e8cb801882bdc3cfd5759002f73afea8692621674d in atac-seq-pipeline/ 7.7 KB
36ENV PATH=/software/atac-seq-pipeline:/software/atac-seq-pipeline/src:/software/phantompeakqualtools-1.2:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
37ENTRYPOINT ["/bin/bash" "-c"]0 B

Command

ADD file:f5a2d04c3f3cafada15eb32e4e8d971e48ef11724939c399a8664bf498111e67 in /