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leepc12/atac-seq-pipeline-test:latest

Manifest digest

sha256:1d4f2fd38de06e17c647b266caabb711d122ddbb285c4078a9be4b9d6795621d

OS/ARCH

linux/amd64

Compressed size

729.08 MB

Last pushed

over 8 years by leepc12

Type

Image

Manifest digest

sha256:1d4f2fd38de06e17c647b266caabb711d122ddbb285c4078a9be4b9d6795621d

Image Layers

Image Layers

1ADD file ... in / 41.03 MB
2/bin/sh -c set -xe &&850 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*621 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'851 B
5/bin/sh -c mkdir -p /run/systemd169 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Jin Lee0 B
8/bin/sh -c apt-get update &&371.79 MB
9/bin/sh -c mkdir /software97 B
10WORKDIR /software0 B
11ENV PATH=/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
12/bin/sh -c git clone --branch7.72 MB
13ENV LD_LIBRARY_PATH=/opt/openblas/lib:0 B
14/bin/sh -c pip install --no-cache-dir7.85 MB
15/bin/sh -c wget https://github.com/ottojolanki/numpy/archive/numpy_1.11.3_release.zip &&14.33 MB
16/bin/sh -c git clone --branch79.01 MB
17/bin/sh -c git clone --branch99.17 MB
18/bin/sh -c pip install --no-cache-dir4.5 MB
19/bin/sh -c git clone --branch107.28 KB
20/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedClip &&1.68 MB
21/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig &&1.68 MB
22/bin/sh -c git clone --branch1.33 MB
23/bin/sh -c git clone --branch818.26 KB
24/bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/2.10.6/picard.jar &&29.97 MB
25/bin/sh -c wget https://github.com/lomereiter/sambamba/releases/download/v0.6.6/sambamba_v0.6.6_linux.tar.bz2 &&1.23 MB
26/bin/sh -c echo "r <-42.84 MB
27/bin/sh -c wget https://github.com/hms-dbmi/spp/archive/1.13.tar.gz &&580.86 KB
28/bin/sh -c wget https://github.com/kundajelab/phantompeakqualtools/archive/1.2.tar.gz &&120.65 KB
29ENV PATH=/software/phantompeakqualtools-1.2:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
30/bin/sh -c pip install --no-cache-dir387.19 KB
31/bin/sh -c wget https://github.com/BenLangmead/bowtie2/releases/download/v2.2.6/bowtie2-2.2.6-linux-x86_64.zip &&21.06 MB
32/bin/sh -c pip install --no-cache-dir34.4 KB
33/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedToBigBed &&1.83 MB
34/bin/sh -c mkdir -p atac-seq-pipeline/src148 B
35COPY dir:95e4e4d84d31e00ae4e4894a52b4b5611b6c2cc0ff18edcb5325c4dbb5440f99 in atac-seq-pipeline/src/ 41.69 KB
36COPY file:ea6973e7138f3b40ac8f03e05e013bcc0ef211c8574e8fcfa800902245afa22a in atac-seq-pipeline/ 7.76 KB
37ENV PATH=/software/atac-seq-pipeline:/software/atac-seq-pipeline/src:/software/phantompeakqualtools-1.2:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
38ENTRYPOINT ["/bin/bash" "-c"]0 B

Command

ADD file:592c2540de1c707636622213ee30ff5b6f8be0a48bb25c97edc7204ea4df1a81 in /