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jpsmith5/peppro:latest

Manifest digest

sha256:dc259e021103d937cb6a1c4aee603cc4ace1c851bc0777d162fb57820a97c0d3

OS/ARCH

linux/amd64

Compressed size

1.94 GB

Last pushed

almost 4 years by jpsmith5

Type

Image

Manifest digest

sha256:dc259e021103d937cb6a1c4aee603cc4ace1c851bc0777d162fb57820a97c0d3

Image Layers

Image Layers

1ADD file ... in / 29.02 MB
2CMD ["bash"]0 B
3ARG QEMU_ARCH0 B
4COPY . /bd_build # buildkit14.85 KB
5RUN |1 QEMU_ARCH= /bin/sh -c51.47 MB
6ENV DEBIAN_FRONTEND=teletype LANG=en_US.UTF-8 LANGUAGE=en_US:en LC_ALL=en_US.UTF-80 B
7CMD ["/sbin/my_init"]0 B
8LABEL maintainer=Jason Smith [email protected]0 B
9LABEL version=0.10.20 B
10CMD ["/sbin/my_init"]0 B
11RUN /bin/sh -c add-apt-repository ppa:deadsnakes/ppa54.69 MB
12RUN /bin/sh -c apt-get update555.92 MB
13RUN /bin/sh -c apt-get upgrade9.35 MB
14RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get95.61 MB
15RUN /bin/sh -c python3 -m5.49 MB
16RUN /bin/sh -c pip install35.01 MB
17RUN /bin/sh -c pip install107.95 MB
18RUN /bin/sh -c apt update5.16 MB
19RUN /bin/sh -c apt-key adv201.2 KB
20RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get120.5 MB
21RUN /bin/sh -c Rscript -e228.7 MB
22WORKDIR /home/src/146 B
23RUN /bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.16/htslib-1.16.tar.bz272.96 MB
24WORKDIR /home/src/32 B
25RUN /bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.16.1/samtools-1.16.1.tar.bz246.05 MB
26RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get3.69 MB
27WORKDIR /home/src/32 B
28RUN /bin/sh -c wget -O36.99 MB
29WORKDIR /home/src/32 B
30RUN /bin/sh -c wget https://github.com/shenwei356/seqkit/releases/download/v0.10.1/seqkit_linux_amd64.tar.gz6.32 MB
31WORKDIR /home/src/32 B
32RUN /bin/sh -c git clone13.28 MB
33WORKDIR /home/src/32 B
34RUN /bin/sh -c git clone315.57 KB
35WORKDIR /home/src/32 B
36RUN /bin/sh -c wget https://github.com/smithlabcode/preseq/releases/download/v3.1.2/preseq-3.1.2.tar.gz13.64 MB
37WORKDIR /home/tools/148 B
38RUN /bin/sh -c wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64.v385/wigToBigWig4.11 MB
39WORKDIR /home/src/32 B
40RUN /bin/sh -c wget -O92.55 KB
41WORKDIR /home/src/32 B
42RUN /bin/sh -c wget https://github.com/Kitware/CMake/releases/download/v3.25.1/cmake-3.25.1-linux-x86_64.sh92.02 MB
43RUN /bin/sh -c git clone605.75 KB
44WORKDIR /home/tools/32 B
45RUN /bin/sh -c wget https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.9.zip19.39 MB
46WORKDIR /home/tools/32 B
47RUN /bin/sh -c git clone226.52 MB
48RUN /bin/sh -c exec bash32 B
49WORKDIR /home/tools/32 B
50RUN /bin/sh -c git clone7.55 MB
51WORKDIR /home/tools/32 B
52RUN /bin/sh -c wget http://genometools.org/pub/genometools-1.6.2.tar.gz110.41 MB
53WORKDIR /home/tools/32 B
54RUN /bin/sh -c wget -O33.38 MB
55RUN /bin/sh -c exec bash32 B
56ENV PATH=/home/tools/bin:/home/tools/:/home/tools/bin/kentUtils/:/home/src/bowtie2-2.5.0:/home/src/skewer:/home/src/samtools-1.16.1:/home/src/htslib-1.16:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin R_LIBS_USER=/usr/local/lib/R/site-library/ PYTHONPATH=/usr/local/lib/python3.8/dist-packages:0 B
57RUN /bin/sh -c echo 'alias1.56 KB
58RUN /bin/sh -c update-alternatives --install4.49 KB
59WORKDIR /home/32 B
60CMD ["/bin/bash"]0 B
61RUN /bin/sh -c apt-get clean1.03 KB

Command

ADD file:a7268f82a86219801950401c224cabbdd83ef510a7c71396b25f70c2639ae4fa in /