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jpsmith5/pepatac:0.8.0

Manifest digest

sha256:228bdbc1e6d7cfbdf8cd69596d83fdaeeef65f214bf402b3488244a98dd085e3

OS/ARCH

linux/amd64

Compressed size

737.12 MB

Last pushed

over 8 years by jpsmith5

Type

Image

Manifest digest

sha256:228bdbc1e6d7cfbdf8cd69596d83fdaeeef65f214bf402b3488244a98dd085e3

Image Layers

Image Layers

1ADD file ... in / 40.97 MB
2/bin/sh -c set -xe &&847 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*620 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'854 B
5/bin/sh -c mkdir -p /run/systemd169 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Phusion <[email protected]>0 B
8COPY dir:07743f22f65309c3cae28e2a3cc337bd9332363166589c2603af03e81d149628 in /bd_build 14.61 KB
9/bin/sh -c /bd_build/prepare.sh && /bd_build/system_services.sh47.22 MB
10ENV DEBIAN_FRONTEND=teletype LANG=en_US.UTF-8 LANGUAGE=en_US:en0 B
11CMD ["/sbin/my_init"]0 B
12LABEL maintainer=Jason Smith [email protected]0 B
13LABEL version=0.8.00 B
14CMD ["/sbin/my_init"]0 B
15/bin/sh -c apt-get update &&271.41 MB
16/bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get install57.25 MB
17/bin/sh -c pip install --upgrade3.4 MB
18/bin/sh -c pip install virtualenv56.66 MB
19/bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get --assume-yes118.33 MB
20/bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get install3.79 MB
21WORKDIR /home/tools/114 B
22/bin/sh -c wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.7.zip &&19.39 MB
23WORKDIR /home/src/112 B
24/bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.7/htslib-1.7.tar.bz2 &&24.66 MB
25WORKDIR /home/src/0 B
26/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.7/samtools-1.7.tar.bz2 &&24.7 MB
27WORKDIR /home/src/0 B
28/bin/sh -c wget https://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.3.4.1/bowtie2-2.3.4.1-source.zip &&35.44 MB
29WORKDIR /home/tools/bin0 B
30/bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/2.18.0/picard.jar &&26.06 MB
31WORKDIR /home/tools/0 B
32/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig &&6.88 MB
33WORKDIR /home/src/0 B
34/bin/sh -c git clone git://github.com/relipmoc/skewer.git358.9 KB
35WORKDIR /home/src/0 B
36/bin/sh -c wget https://github.com/aboyle/F-seq/archive/master.zip &&354.29 KB
37WORKDIR /home/src/0 B
38/bin/sh -c wget http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip &&256.25 KB
39ENV PATH=/home/tools/bin:/home/tools/:/home/tools/bin/kentUtils/:/home/src/F-seq-master/dist~/fseq/bin:/home/src/bowtie2-2.3.4.1:/home/src/skewer:/home/src/samtools-1.7:/home/src/Trimmomatic-0.36/:/home/src/htslib-1.7:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin TRIMMOMATIC=/home/src/Trimmomatic-0.36/trimmomatic-0.36.jar PICARD=/home/tools/bin/picard.jar0 B
40WORKDIR /home/0 B
41CMD ["/bin/bash"]0 B
42/bin/sh -c apt-get clean &&1.06 KB

Command

ADD file:c753df38640ab6e246d9e66f0cef7156b7003976080b1e0b83e5717cd6ef1725 in /