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jpsmith5/pepatac:0.2.0

Manifest digest

sha256:5ebcf90ec0d67f6aae29c2dacd0928288c12af464dba276c8538b502a90928f8

OS/ARCH

linux/amd64

Compressed size

698.28 MB

Last pushed

over 8 years by jpsmith5

Type

Image

Manifest digest

sha256:5ebcf90ec0d67f6aae29c2dacd0928288c12af464dba276c8538b502a90928f8

Image Layers

Image Layers

1ADD file ... in / 40.97 MB
2/bin/sh -c set -xe &&847 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*620 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'854 B
5/bin/sh -c mkdir -p /run/systemd169 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Phusion <[email protected]>0 B
8COPY dir:07743f22f65309c3cae28e2a3cc337bd9332363166589c2603af03e81d149628 in /bd_build 14.61 KB
9/bin/sh -c /bd_build/prepare.sh && /bd_build/system_services.sh47.22 MB
10ENV DEBIAN_FRONTEND=teletype LANG=en_US.UTF-8 LANGUAGE=en_US:en0 B
11CMD ["/sbin/my_init"]0 B
12MAINTAINER Jason Smith "[email protected]"0 B
13CMD ["/sbin/my_init"]0 B
14/bin/sh -c apt-get update &&267.32 MB
15/bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get install57.21 MB
16/bin/sh -c pip install --upgrade3.56 MB
17/bin/sh -c pip install virtualenv30.01 MB
18/bin/sh -c pip install MACS210.48 MB
19/bin/sh -c echo "deb http://cran.rstudio.com/bin/linux/ubuntu881 B
20/bin/sh -c gpg --keyserver keyserver.ubuntu.com5.92 KB
21/bin/sh -c gpg -a --export13.09 KB
22/bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get --assume-yes73.37 MB
23/bin/sh -c echo "r <-211 B
24/bin/sh -c Rscript -e "install.packages('gplots')"1.92 MB
25/bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get install3.78 MB
26/bin/sh -c mkdir /home/src112 B
27/bin/sh -c mkdir /home/tools114 B
28WORKDIR /home/tools/0 B
29/bin/sh -c wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.7.zip9.72 MB
30/bin/sh -c unzip fastqc_v0.11.7.zip9.67 MB
31WORKDIR /home/tools/FastQC0 B
32/bin/sh -c chmod 755 fastqc4.86 KB
33/bin/sh -c ln -s /home/tools/FastQC/fastqc167 B
34WORKDIR /home/src/0 B
35/bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.7/htslib-1.7.tar.bz21.02 MB
36/bin/sh -c tar xf htslib-1.7.tar.bz21.15 MB
37WORKDIR /home/src/htslib-1.70 B
38/bin/sh -c ./configure --prefix /home/tools/16.9 KB
39/bin/sh -c make17.07 MB
40/bin/sh -c make install5.35 MB
41WORKDIR /home/src/0 B
42/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.7/samtools-1.7.tar.bz24.05 MB
43/bin/sh -c tar xf samtools-1.7.tar.bz25 MB
44WORKDIR /home/src/samtools-1.70 B
45/bin/sh -c ./configure30.46 KB
46/bin/sh -c make13.62 MB
47/bin/sh -c make install1.9 MB
48/bin/sh -c ln -s /home/src/samtools-1.7/samtools162 B
49WORKDIR /home/src/0 B
50/bin/sh -c wget https://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.3.4.1/bowtie2-2.3.4.1-source.zip5.45 MB
51/bin/sh -c unzip bowtie2-2.3.4.1-source.zip5.24 MB
52WORKDIR /home/src/bowtie2-2.3.4.10 B
53/bin/sh -c make12.36 MB
54/bin/sh -c make install12.38 MB
55/bin/sh -c ln -s /home/src/bowtie2-2.3.4.1/bowtie2164 B
56WORKDIR /home/tools/bin0 B
57/bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/2.18.0/picard.jar26.06 MB
58/bin/sh -c chmod +x picard.jar26.06 MB
59WORKDIR /home/tools/0 B
60/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig1.69 MB
61/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/wigToBigWig1.69 MB
62/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bigWigCat1.74 MB
63/bin/sh -c ln -s /home/tools/bedGraphToBigWig171 B
64/bin/sh -c ln -s /home/tools/wigToBigWig165 B
65/bin/sh -c ln -s /home/tools/bigWigCat161 B
66WORKDIR /home/src/0 B
67/bin/sh -c git clone git://github.com/relipmoc/skewer.git179.23 KB
68WORKDIR /home/src/skewer0 B
69/bin/sh -c make175.73 KB
70/bin/sh -c make install83.09 KB
71WORKDIR /home/src/0 B
72/bin/sh -c wget https://github.com/aboyle/F-seq/archive/master.zip67.39 KB
73/bin/sh -c unzip master.zip61.13 KB
74WORKDIR /home/src/F-seq-master0 B
75/bin/sh -c ant166.58 KB
76WORKDIR /home/src/F-seq-master/dist~0 B
77/bin/sh -c tar xf fseq.tgz60.89 KB
78/bin/sh -c ln -s /home/src/F-seq-master/dist~/fseq/bin/fseq174 B
79WORKDIR /home/src/0 B
80/bin/sh -c wget http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip127.92 KB
81/bin/sh -c unzip Trimmomatic-0.36.zip128.44 KB
82/bin/sh -c chmod +x Trimmomatic-0.36/trimmomatic-0.36.jar114.55 KB
83ENV PATH=/home/tools/bin:/home/tools/:/home/tools/bin/kentUtils/:/home/src/F-seq-master/dist~/fseq/bin:/home/src/bowtie2-2.3.4.1:/home/src/skewer:/home/src/samtools-1.7:/home/src/Trimmomatic-0.36/:/home/src/htslib-1.7:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin TRIMMOMATIC=/home/src/Trimmomatic-0.36/trimmomatic-0.36.jar PICARD=/home/tools/bin/picard.jar0 B
84WORKDIR /home/0 B
85CMD ["/bin/bash"]0 B
86/bin/sh -c apt-get clean &&1.06 KB

Command

ADD file:c753df38640ab6e246d9e66f0cef7156b7003976080b1e0b83e5717cd6ef1725 in /