Sign inSign up

jonnsmith/lrma_alignment_toolbox:latest

Manifest digest

sha256:a5e2f63b76d3a15291723d5eb1bba9799ec3faac39fc3971bac14774049bc081

OS/ARCH

linux/amd64

Compressed size

5.52 GB

Last pushed

over 6 years by jonnsmith

Type

Image

Manifest digest

sha256:a5e2f63b76d3a15291723d5eb1bba9799ec3faac39fc3971bac14774049bc081

Image Layers

Image Layers

1ADD file ... in / 25.45 MB
2/bin/sh -c [ -z "$(apt-get34.54 KB
3/bin/sh -c set -xe &&848 B
4/bin/sh -c mkdir -p /run/systemd162 B
5CMD ["/bin/bash"]0 B
6LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
7/bin/sh -c apt-get update &&6.88 MB
8ENV CUDA_VERSION=10.1.2430 B
9ENV CUDA_PKG_VERSION=10-1=10.1.243-10 B
10/bin/sh -c apt-get update &&8.05 MB
11/bin/sh -c echo "/usr/local/nvidia/lib" >>184 B
12ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
13ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B
14ENV NVIDIA_VISIBLE_DEVICES=all0 B
15ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility0 B
16ENV NVIDIA_REQUIRE_CUDA=cuda>=10.1 brand=tesla,driver>=384,driver<385 brand=tesla,driver>=396,driver<3970 B
17LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
18ENV NCCL_VERSION=2.4.80 B
19/bin/sh -c apt-get update &&656.83 MB
20LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
21/bin/sh -c apt-get update &&782.86 MB
22ENV LIBRARY_PATH=/usr/local/cuda/lib64/stubs0 B
23MAINTAINER Jonn Smith <[email protected]>0 B
24WORKDIR /0 B
25/bin/sh -c apt-get update19.41 MB
26/bin/sh -c apt-get -y install81.9 MB
27/bin/sh -c apt-get -y install32.17 MB
28/bin/sh -c apt-get -y install11 MB
29/bin/sh -c apt-get -y install566.02 KB
30/bin/sh -c apt-get clean &&901 B
31/bin/sh -c pip3 install mappy1.11 MB
32/bin/sh -c pip3 install --no-cache-dir21.56 MB
33/bin/sh -c pip3 install --no-cache-dir14.76 MB
34/bin/sh -c pip3 install --no-cache-dir27.16 MB
35/bin/sh -c pip3 install pysam19.8 MB
36/bin/sh -c pip3 install tqdm149.74 KB
37WORKDIR /tmp0 B
38/bin/sh -c mkdir /opt/cmake &&71.53 MB
39/bin/sh -c rm /tmp/cmake-3.14.4-Linux-x86_64.sh156 B
40/bin/sh -c git clone https://github.com/lh3/minimap2.git3.73 MB
41/bin/sh -c git clone https://github.com/lh3/miniasm.git1.44 MB
42/bin/sh -c git clone --recursive189.48 MB
43/bin/sh -c git clone https://github.com/lh3/bwa.git4.06 MB
44WORKDIR /opt0 B
45/bin/sh -c git clone https://github.com/chanzuckerberg/shasta.git2.41 MB
46WORKDIR /opt/shasta/build144 B
47/bin/sh -c ../scripts/InstallPrerequisites-Ubuntu.sh146.33 MB
48/bin/sh -c cmake .. &&17.84 MB
49WORKDIR /0 B
50/bin/sh -c git clone https://github.com/marbl/canu.git245.6 MB
51/bin/sh -c apt-get -y install537.71 KB
52/bin/sh -c apt-get -y install902.23 KB
53/bin/sh -c apt-get -y install5.73 MB
54/bin/sh -c git clone https://github.com/UCSC-nanopore-cgl/marginPolish.git177.76 MB
55/bin/sh -c apt-get -y install400 B
56/bin/sh -c pip3 install h5py1.43 GB
57/bin/sh -c pip3 install torch17.15 MB
58/bin/sh -c git clone https://github.com/kishwarshafin/helen.git9.24 MB
59/bin/sh -c sudo apt-get -y37.51 MB
60/bin/sh -c git clone --recursive108.51 MB
61/bin/sh -c cd ClaraGenomicsAnalysis/pyclaragenomics &&140.23 MB
62/bin/sh -c git clone https://github.com/fenderglass/Flye84.56 MB
63/bin/sh -c git clone https://github.com/ruanjue/wtdbg24.9 MB
64/bin/sh -c sudo apt-get -y1.09 MB
65/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.9/samtools-1.9.tar.bz2 &&17.48 MB
66/bin/sh -c mkdir ~/.ssh &&495 B
67/bin/sh -c wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh &&137.69 MB
68/bin/sh -c git clone https://github.com/maickrau/GraphAligner.git982.69 MB
69/bin/sh -c cd GraphAligner &&12.79 MB
70/bin/sh -c echo '#!/usr/bin/env bash\nsource201 B
71/bin/sh -c cd /bin &&14.15 MB
72/bin/sh -c apt-get install -y849.42 KB
73/bin/sh -c pip3 install numba48 MB
74COPY file:757349c8db68f433b3721436808cc7ee413290c478e863e7a03698b6d1882fb4 in /reference_sequences/pac_bio_left_adapter.fasta 221 B
75/bin/sh -c echo "set number\nset173 B
76WORKDIR /0 B

Command

ADD file:c477cb0e95c56b51e0b7353f3805165393689902b82a41bbe77dbef4b31667e1 in /