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jonnsmith/lrma_10x_tool:latest

Manifest digest

sha256:6916fa735c83b7cbd9d80a08d23076cb1f03f39990086024ebab91e5268a2c6a

OS/ARCH

linux/amd64

Compressed size

2.17 GB

Last pushed

over 6 years by jonnsmith

Type

Image

Manifest digest

sha256:6916fa735c83b7cbd9d80a08d23076cb1f03f39990086024ebab91e5268a2c6a

Image Layers

Image Layers

1ADD file ... in / 41.74 MB
2/bin/sh -c set -xe &&848 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*526 B
4/bin/sh -c mkdir -p /run/systemd168 B
5CMD ["/bin/bash"]0 B
6/bin/sh -c apt-get update &&0 B
7/bin/sh -c export CLOUD_SDK_REPO="cloud-sdk-$(lsb_release -c0 B
8ENV HOME=/root0 B
9WORKDIR /root0 B
10CMD ["bash"]0 B
11ENV JAVA_LIBRARY_PATH=/usr/lib/jni0 B
12ENV JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64/0 B
13/bin/sh -c java -version0 B
14/bin/sh -c apt-key adv --keyserver0 B
15COPY file:054d95341648431cf9a39b5065f1e226c2e9594a5ab7f3e013b1b422583f57c3 in install_R_packages.R 0 B
16/bin/sh -c Rscript install_R_packages.R0 B
17/bin/sh -c rm -rf /var/lib/apt/lists/*0 B
18397.82 MB
19ARG ZIPPATH0 B
20ADD dir:587fc034e2e8518deaa6003d4fcb4d99afed4d5dfae2a0222b990f33737ab894 in /gatk 0 B
21WORKDIR /gatk0 B
22|1 ZIPPATH=./unzippedJar /bin/sh -c ln0 B
23|1 ZIPPATH=./unzippedJar /bin/sh -c ln0 B
24|1 ZIPPATH=./unzippedJar /bin/sh -c ln0 B
25WORKDIR /root0 B
26|1 ZIPPATH=./unzippedJar /bin/sh -c java0 B
27|1 ZIPPATH=./unzippedJar /bin/sh -c mkdir0 B
28|1 ZIPPATH=./unzippedJar /bin/sh -c mkdir0 B
29|1 ZIPPATH=./unzippedJar /bin/sh -c mkdir0 B
30WORKDIR /gatk0 B
31ENV CI=true0 B
32|1 ZIPPATH=./unzippedJar /bin/sh -c echo0 B
33WORKDIR /root0 B
34|1 ZIPPATH=./unzippedJar /bin/sh -c cp0 B
35|1 ZIPPATH=./unzippedJar /bin/sh -c cp0 B
36ENV CLASSPATH=/gatk/gatk.jar:0 B
37|1 ZIPPATH=./unzippedJar /bin/sh -c cp0 B
38ENV DOWNLOAD_DIR=/downloads0 B
39ENV CONDA_URL=https://repo.continuum.io/miniconda/Miniconda3-4.3.30-Linux-x86_64.sh0 B
40ENV CONDA_MD5== 0b80a152332a4ce5250f3c09589c7a810 B
41ENV CONDA_PATH=/opt/miniconda0 B
42|1 ZIPPATH=./unzippedJar /bin/sh -c mkdir0 B
43WORKDIR /gatk0 B
44ENV PATH=/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
45|1 ZIPPATH=./unzippedJar /bin/sh -c conda0 B
46CMD ["bash" "--init-file" "/gatk/gatkenv.rc"]0 B
47ENV PATH=/gatk:/opt/miniconda/envs/gatk/bin:/opt/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
481.03 GB
49WORKDIR /lrma127 B
50ADD dir:9681d5bb91d9180e3fbca3b67e72acb1e98af92e9aae441b30ff5b0171a6480a in /lrma/ssw 3.64 KB
51/bin/sh -c wget -O ssw-zip.zip11.76 MB
52/bin/sh -c unzip ssw-zip.zip11.6 MB
53/bin/sh -c cd Complete-Striped-Smith-Waterman-Library-master/src &&8.86 KB
54/bin/sh -c mv Complete-Striped-Smith-Waterman-Library-master/src/libssw.so /lrma/ssw/libssw.so8.88 KB
55/bin/sh -c wget -O starcode-zip.zip2.48 MB
56/bin/sh -c unzip starcode-zip.zip2.48 MB
57/bin/sh -c cd starcode-master &&57.06 KB
58ADD file ... in /lrma/environment.yml 233 B
59/bin/sh -c conda env create655.76 MB
60/bin/sh -c apt-get update18.54 MB
61/bin/sh -c apt-get install -y21.3 MB
62ADD file ... in /lrma/tool.py 6.33 KB
63ADD file ... in /lrma/tool_rle.py 2.78 KB
64ADD multi:5823af22bfeb6d4f59f621d3b27336f029057850bbca357b5ca6726609f7070d in /lrma/ 2.19 KB

Command

ADD file:a65e0467dbedc0992151651c136374c16f65d9905eac9d04d0925039ada64e4c in /