jennydaman/orthofinder:2.5.4

Manifest digest

sha256:82c32a8cdc0b03942edbecd333b92d4e7ad059225e88e45ccf9c487559f08fdd

OS/ARCH

linux/amd64

Compressed size

284.11 MB

Last pushed

almost 5 years by jennydaman

Type

Image

Manifest digest

sha256:82c32a8cdc0b03942edbecd333b92d4e7ad059225e88e45ccf9c487559f08fdd

Image Layers

1ADD file ... in / 48.1 MB

2CMD ["bash"]0 B

3RUN /bin/sh -c apt-get update207 B

4ENV DEBIAN_FRONTEND=noninteractive0 B

5ENV PACKAGES=wget mafft mcl libatlas-base-dev0 B

6RUN /bin/sh -c apt-get update12.97 MB

7RUN /bin/sh -c apt-get install84.7 MB

8ENV FASTTREE_URL=http://www.microbesonline.org/fasttree/FastTree0 B

9RUN /bin/sh -c wget -P200.48 KB

10ENV FASTME_URL=https://gite.lirmm.fr/atgc/FastME/raw/master/tarball/fastme-2.1.6.2.tar.gz0 B

11ENV FASTME_PATH=fastme-2.1.6.20 B

12WORKDIR /opt0 B

13RUN /bin/sh -c wget ${FASTME_URL}697.24 KB

14ENV DIAMOND_URL=https://github.com/bbuchfink/diamond/releases/latest/download/diamond-linux64.tar.gz0 B

15WORKDIR /opt0 B

16RUN /bin/sh -c wget ${DIAMOND_URL}12.69 MB

17ENV ORTHOFINDER_FILE_NAME=OrthoFinder.tar.gz0 B

18ENV ORTHOFINDER_URL=https://github.com/davidemms/OrthoFinder/releases/latest/download/OrthoFinder.tar.gz0 B

19ENV ORTHOFINDER_PATH=/opt/OrthoFinder0 B

20WORKDIR /opt0 B

21RUN /bin/sh -c wget ${ORTHOFINDER_URL}122.21 MB

22RUN /bin/sh -c ln -s183 B

23RUN /bin/sh -c ln -s185 B

24RUN /bin/sh -c rm -r165 B

25WORKDIR /root0 B

26RUN /bin/sh -c pwd &&0 B

27RUN /bin/sh -c orthofinder -f2.57 MB

28RUN /bin/sh -c rm /opt/${ORTHOFINDER_FILE_NAME}141 B

29MAINTAINER David Emms <[email protected]>0 B

Command

ADD file:98c256057b79b141aea9a806a4538cf6c3f340d7e3b0d6e8c363699333f3406b in /