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immcantation/lab:4.4.0

Machine learning & AI
Data science
Manifest digest

sha256:047a211bfaa39affb2d434dd6d041595d7ec759d3a7e3b7980a39c564776c5ab

OS/ARCH

linux/amd64

Compressed size

1.54 GB

Last pushed

almost 4 years by immcantation

Type

Image

Manifest digest

sha256:047a211bfaa39affb2d434dd6d041595d7ec759d3a7e3b7980a39c564776c5ab

Image Layers

Image Layers

1LABEL maintainer=Clement Verna <[email protected]>0 B
2ENV DISTTAG=f37container FGC=f37 FBR=f370 B
3ADD file ... in / 63.03 MB
4CMD ["/bin/bash"]0 B
5LABEL maintainer=Jason Anthony Vander Heiden0 B
6VOLUME [/data]0 B
7VOLUME [/scratch]0 B
8VOLUME [/software]0 B
9VOLUME [/oasis]0 B
10COPY tools/versions.py /usr/local/bin/versions # buildkit3.04 KB
11COPY tools/builds.py /usr/local/bin/builds # buildkit1.42 KB
12COPY tools/pipelines.py /usr/local/bin/pipelines # buildkit1.26 KB
13COPY tools/rinstall.R /usr/local/bin/rinstall # buildkit678 B
14RUN /bin/sh -c (cd /etc/yum.repos.d;995 B
15RUN /bin/sh -c dnf -y724.63 MB
16ENV LD_LIBRARY_PATH=/usr/lib64/R/lib:/usr/lib64/atlas0 B
17ARG R_REPO=http://lib.stat.cmu.edu/R/CRAN/0 B
18ARG R_DEPS=c('Rcpp', 0 B
19ARG R_BIOC_DEPS=c('Biostrings', 0 B
20RUN |3 R_REPO=http://lib.stat.cmu.edu/R/CRAN/ R_DEPS=c('Rcpp', 170.16 MB
21LABEL maintainer=Jason Anthony Vander0 B
22ARG BASE_TAG0 B
23COPY file:86c1772520e084c658aa742ad5f7c91b5881353ea3d97c00980e71dcb24302f7 in /Version.yaml 349 B
24COPY file:98ba4adcfce316175e72b7aa3befc4b9bda64c2ef696e6156d368d6e0b7af202 in /Pipeline.yaml 476 B
25|1 BASE_TAG=4.4.0 /bin/sh -c builds279 B
26|1 BASE_TAG=4.4.0 /bin/sh -c PACKAGE="immcantation"29.52 KB
27|1 BASE_TAG=4.4.0 /bin/sh -c MUSCLE=$(versions578.74 KB
28|1 BASE_TAG=4.4.0 /bin/sh -c VSEARCH=$(versions650.73 KB
29|1 BASE_TAG=4.4.0 /bin/sh -c CDHIT=$(versions430.78 KB
30|1 BASE_TAG=4.4.0 /bin/sh -c BLAST=$(versions228.22 MB
31|1 BASE_TAG=4.4.0 /bin/sh -c IGBLAST=$(versions54.77 MB
32|1 BASE_TAG=4.4.0 /bin/sh -c PHYLIP=$(versions4.31 MB
33|1 BASE_TAG=4.4.0 /bin/sh -c wget5.25 MB
34|1 BASE_TAG=4.4.0 /bin/sh -c AIRR_PY=$(versions14.79 MB
35|1 BASE_TAG=4.4.0 /bin/sh -c PACKAGE="presto"153.19 KB
36|1 BASE_TAG=4.4.0 /bin/sh -c PACKAGE="changeo"209.87 KB
37|1 BASE_TAG=4.4.0 /bin/sh -c PACKAGE="alakazam"25.4 MB
38|1 BASE_TAG=4.4.0 /bin/sh -c PACKAGE="shazam"3.01 MB
39|1 BASE_TAG=4.4.0 /bin/sh -c PACKAGE="tigger"5.41 MB
40|1 BASE_TAG=4.4.0 /bin/sh -c PACKAGE="scoper"3.73 MB
41|1 BASE_TAG=4.4.0 /bin/sh -c PACKAGE="dowser"6.25 MB
42|1 BASE_TAG=4.4.0 /bin/sh -c PACKAGE="enchantr"37.39 MB
43|1 BASE_TAG=4.4.0 /bin/sh -c PACKAGE="prestor"1.79 MB
44|1 BASE_TAG=4.4.0 /bin/sh -c IGPHYML=$(versions7.2 MB
45|1 BASE_TAG=4.4.0 /bin/sh -c PACKAGE="rdi"1.31 MB
46|1 BASE_TAG=4.4.0 /bin/sh -c RABHIT=$(versions10.13 MB
47|1 BASE_TAG=4.4.0 /bin/sh -c SEURAT=$(versions52.95 MB
48|1 BASE_TAG=4.4.0 /bin/sh -c fetch_imgtdb.sh1.16 MB
49ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/local/share/igphyml/src0 B
50|1 BASE_TAG=4.4.0 /bin/sh -c useradd2.09 KB
51CMD ["/bin/sh" "-c" "echo0 B
52LABEL maintainer=Susanna Marquez [[email protected]]0 B
53ARG BASE_TAG0 B
54|1 BASE_TAG=4.4.0 /bin/sh -c echo0 B
55USER root0 B
56|1 BASE_TAG=4.4.0 /bin/sh -c cp1.92 MB
57ENV NB_USER=magus0 B
58ENV NB_UID=10000 B
59ENV HOME=/home/magus0 B
60|1 BASE_TAG=4.4.0 /bin/sh -c mkdir245 B
61VOLUME [/home/magus/results]0 B
62|1 BASE_TAG=4.4.0 /bin/sh -c PACKAGE="immcantation"2.47 MB
63|1 BASE_TAG=4.4.0 /bin/sh -c pip37.77 MB
64|1 BASE_TAG=4.4.0 /bin/sh -c pip3395.53 KB
65|1 BASE_TAG=4.4.0 /bin/sh -c pip330.79 MB
66|1 BASE_TAG=4.4.0 /bin/sh -c pip322.87 MB
67|1 BASE_TAG=4.4.0 /bin/sh -c python3497 B
68|1 BASE_TAG=4.4.0 /bin/sh -c jupyter22.22 MB
69|1 BASE_TAG=4.4.0 /bin/sh -c jupyter379 B
70|1 BASE_TAG=4.4.0 /bin/sh -c Rscript255 B
71ARG R_DEPS=c('uuid')0 B
72|2 BASE_TAG=4.4.0 R_DEPS=c('uuid') /bin/sh -c4.97 MB
73WORKDIR /home/magus/notebooks0 B
74EXPOSE 88880 B
75COPY file:61be165fdd7660f8bbc345179e88f16d82106c0928341e774c13a92065541e8a in /usr/local/bin/ 234 B
76|2 BASE_TAG=4.4.0 R_DEPS=c('uuid') /bin/sh -c7.43 MB
77USER magus0 B
78|2 BASE_TAG=4.4.0 R_DEPS=c('uuid') /bin/sh -c296 B
79|2 BASE_TAG=4.4.0 R_DEPS=c('uuid') /bin/sh -c289 B
80|2 BASE_TAG=4.4.0 R_DEPS=c('uuid') /bin/sh -c5.16 MB
81|2 BASE_TAG=4.4.0 R_DEPS=c('uuid') /bin/sh -c18.7 MB
82|2 BASE_TAG=4.4.0 R_DEPS=c('uuid') /bin/sh -c4.93 MB
83|2 BASE_TAG=4.4.0 R_DEPS=c('uuid') /bin/sh -c19.7 MB
84CMD ["start-notebook.sh"]0 B

Command

 LABEL maintainer=Clement Verna <[email protected]>