Sign inSign up

google/deepvariant:lr-giraffe-paper

Integration & delivery
Machine learning & AI
Data science
Manifest digest

sha256:48cdba9872975ca5e3ec4fd88625aadc7e271a0211c3d6997afa4afec35c810b

OS/ARCH

linux/amd64

Compressed size

3.29 GB

Last pushed

about 1 year by pichuan

Type

Image

Manifest digest

sha256:48cdba9872975ca5e3ec4fd88625aadc7e271a0211c3d6997afa4afec35c810b

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 29.03 MB
6CMD ["/bin/bash"]0 B
7ARG DV_GPU_BUILD0 B
8ARG VERSION0 B
9ARG PYTHON_VERSION0 B
10ARG TF_ENABLE_ONEDNN_OPTS0 B
11ENV DV_GPU_BUILD=00 B
12ENV VERSION=1.9.00 B
13ENV PYTHON_VERSION=3.100 B
14ENV TF_ENABLE_ONEDNN_OPTS=10 B
15/bin/sh -c echo "Acquire::http::proxy \"$http_proxy\";\n"187 B
16WORKDIR /opt/0 B
17COPY file:6d888630e47e98142ce3dbc46d5baf8952934d6de22cc1aa26d3c61c75c5898a in . 21.98 KB
18WORKDIR /opt/deepvariant/bin/166 B
19COPY dir:a0d9abf148abde87d5a4adccb97402dd334a7f80a40fc08d9c5a539b7456953b in /opt/conda 155.28 MB
20COPY file:4d7071fa8409fc93bb85c4dbc90eae4ece16679b9e2681f168c2a77623becc4a in . 4.62 KB
21COPY file:302e27b40c45efa6eaeb10cbd94081adc73702c088120c4d6623d16bbedfefe6 in . 2.86 KB
22COPY file:3d31ee523b169c9e08ffa2c332e0f02cccf0f3e8753a098e2e1955f1f2f657a6 in . 9.1 MB
23COPY file:80a0ade6bf0e87c58699e036938be9c95fb9d0ba8ee8ceca23f451fb3ddf96f1 in . 9.02 MB
24COPY file:f8af8d23b55de3ff7beeab49d5f0b3a13aa438daa7f53eac0187d00a6e9f5dfa in . 9.01 MB
25COPY file:369f35f89b392e051f2ad174ac1854fd2abf70de3c1db68606851f5bd086c501 in . 8.94 MB
26COPY file:e4734dbb5188fb83376107f7749b7546208409432a87fe406481b748308befa1 in . 8.94 MB
27COPY file:257de91f673a500aae1c7fef1e61f980773a54c2f29b6776af57f20fa7b219a9 in . 133.92 KB
28COPY file:0f4a4117550ea510c43209ac2c26d14643478ac9dd70f867eed652327525996d in . 9.1 MB
29COPY file:bb7ff2ddaab9a440380142527d8098abd3923ad771dff4603568d88e3c7687c3 in . 8.96 MB
30COPY file:f19d5209a0d9db9108ad80479b0a9c235b6969e7bbd2ff22ef2fdd9957ff4ae4 in . 8.96 MB
31COPY file:c9f981067642819fe56f08078f732ee31590975e2af807c7a2f3ba0718e31be8 in . 9.1 MB
32COPY file:ed1ecb08653671862492f12d9dc5888e45a43c16c5af817b71ce9ae4b14d514f in . 8.97 MB
33COPY file:544358f5851e2935917771b4dcfbb93365692c46e213de40bab75970349bd0a8 in . 190.04 KB
34COPY file:508434179b9e068efd6503d8d0ebef277a4227822cbabdbc462b7871a73dce36 in . 7.87 KB
35/bin/sh -c ./run-prereq.sh2.07 GB
36/bin/sh -c update-alternatives --install /usr/bin/python31.46 KB
37/bin/sh -c BASH_HEADER='#!/bin/bash' && 588 B
38WORKDIR /opt/models/wgs162 B
39ADD 3a4569ae1c1f00f342aa121d6dec7ade89db41efcbd86c22e9538938a587d54d in . 274 B
40ADD e7ecd27da8d1dd36013d8e3ba9a090e8f7ed6dd7c4fd034b83b501ee99d177d0 in . 341.75 KB
41ADD dac61b702bda4a221e189b016735773948efdfa5c9b109bb62a86f4c8bd5de3f in . 250 B
42WORKDIR /opt/models/wgs/variables185 B
43ADD 7b58d004e1499505dbd12703a9cc572f579dbf9dba9b56e15385ce9021bc7af3 in . 77.06 MB
44ADD 040d24d619f251ee5dbe5b5f258e0ab86decf98c3fb6743b48e2bfd5a9f86cbb in . 5.95 KB
45/bin/sh -c chmod -R +r77.4 MB
46WORKDIR /opt/models/wes165 B
47ADD 55b3b55e8c2c4f6d371882e1817284bd31094904e370540304ef576f2600df37 in . 286 B
48ADD e7ecd27da8d1dd36013d8e3ba9a090e8f7ed6dd7c4fd034b83b501ee99d177d0 in . 341.76 KB
49ADD dac61b702bda4a221e189b016735773948efdfa5c9b109bb62a86f4c8bd5de3f in . 253 B
50WORKDIR /opt/models/wes/variables186 B
51ADD 16de548e5fba324c5c93a917ea0c72353776d1bb09a8da6bc134cf2040c1ba0d in . 77.17 MB
52ADD cd54471993da5b582962d12ea17e43ee25e59ef360c43e38e31eb0e4429641ff in . 5.95 KB
53/bin/sh -c chmod -R +r77.51 MB
54WORKDIR /opt/models/pacbio169 B
55ADD 48f97687db11c400702f53dd11f2eb53ac2f8979b8daefec691ad9abcd96b0ee in . 286 B
56ADD f4a3bbeb41bf9aa6de2f533235ca7ba5949980f446aee50bcc2878f8b619455f in . 341.68 KB
57ADD 2287691fc9f2e8e1798709c31a9d3c8f0caadb4058fef4d2df8989fd2edc61ed in . 262 B
58WORKDIR /opt/models/pacbio/variables193 B
59ADD 337053c6db00330b3f59741eb3f85664b4e615c1ae8d24b9b575a66eaa9addae in . 75.47 MB
60ADD 568ac1739881eaf960f69e8f30c44c2cb0fa561cac22f84aec4520dd0fac5ac1 in . 5.98 KB
61/bin/sh -c chmod -R +r75.81 MB
62WORKDIR /opt/models/hybrid_pacbio_illumina183 B
63ADD ed0f04227b5eb24c0553bf8a337604554b4829930f449939c02cc104bb2416ad in . 299 B
64ADD 5d32fff9865131b27c23c67ac1698edeccc508b59fa2387c71d44177efc1ca64 in . 341.8 KB
65ADD eb7b9b4b04a750bfab946276bf6ba6d01ad3ceaff0639cef0690ec02da9c441b in . 267 B
66WORKDIR /opt/models/hybrid_pacbio_illumina/variables206 B
67ADD 146d2974d6058b5cd64b1d201191e188fd6329002d4545a17a2afdc3581ae9ca in . 75.53 MB
68ADD f8fc3c786d7af14af282c2577d570a8ea384b81cae6b7df399013013926ef59f in . 6.01 KB
69/bin/sh -c chmod -R +r75.87 MB
70WORKDIR /opt/models/ont_r104171 B
71ADD 9d9298aaa25a2ebff31e5869405028841ba088f5bb573d804f0bd02972894580 in . 290 B
72ADD bdb4402650d6dd69716d0a23aaed8b907b5041777d8093e2c8aa643b6820ac4b in . 341.38 KB
73ADD bd85498476fa59850788091c67c677a6fbc1a77e3d83fa7190d289c0b0ecfb29 in . 259 B
74WORKDIR /opt/models/ont_r104/variables192 B
75ADD 0f189f2154520a5b6a5ce161e3be76444e0585fafb7c27d0e54749183e6018e9 in . 76.47 MB
76ADD b09e403edaacd1b1ddbd6bf1eaaa6ada506c22605c86d2167983058bb00fadb8 in . 5.96 KB
77/bin/sh -c chmod -R +r76.81 MB
78WORKDIR /opt/models/masseq169 B
79ADD 1b7434f410ec964ada9280e15f0ee47391d4615306b3f713d97e59dbea10e9f0 in . 290 B
80ADD 2820ac5fd89626d78c658c700ed291de12ba01aaff92d42d9e0d9e197d00692f in . 341.74 KB
81ADD 663217dab019c3e13c71844ef8342f1e84f58e23bfaff6fa0d264954d8542e7e in . 260 B
82WORKDIR /opt/models/masseq/variables191 B
83ADD 4aa261dd15433a37ebb23aac837c421bfe36bf4d57bb9f6619a1c5e1b4bfd03e in . 77.62 MB
84ADD 12323383a40fc0c725593f15c49a37df5114e99e8c4b4d5a52f526d9695de5a4 in . 5.97 KB
85/bin/sh -c chmod -R +r77.96 MB
86WORKDIR /opt/smallmodels/wgs166 B
87ADD b25bdad9c6e1276d2cf31ca355a19ff088cdc7c31bece57e29a518ee156f6e6d in . 279 B
88ADD e99e7e344db6f1bc864831ebd707844d5f15f9f02ce17ab6c0d2717b83eb9817 in . 7.85 KB
89ADD cd9c8e838828e80ad607420fba7a2acb6eb69081e067dbf48ed05a1db26acd0d in . 1.01 KB
90WORKDIR /opt/smallmodels/wgs/variables188 B
91ADD f7d23ab5bcf1e328062091b0d2a4a20557870496244c202761d8be4b22c0d49d in . 2.21 MB
92ADD 847df1d3b5b6d61d903b1cc9bfb16f439f3da6d17dcd714bc5d940dcd51d1ca1 in . 543 B
93/bin/sh -c chmod -R +r2.22 MB
94WORKDIR /opt/smallmodels/pacbio172 B
95ADD 5ec7cb704aecdd3dfb3d54143e1fe5f11852c8e81dd21d00dca09645fd08060b in . 288 B
96ADD e6d971af14e4cd892fe441afce0e6cc1489dd532ab5243f17c45a6af3870f3ac in . 7.86 KB
97ADD 4272065fe6760a8d8dbd07d2e66cf55af995d334af42396cb51dbc4acc5b090c in . 1.02 KB
98WORKDIR /opt/smallmodels/pacbio/variables194 B
99ADD a3145744685c57d59d15365eac8f44c39746e05b90d91d4a52334eaf1bee78ac in . 2.29 MB
100ADD 534723a2abf33656768a47efbbbbe589b03e4cc69cbf809a3b6f4a7856a916b3 in . 545 B
101/bin/sh -c chmod -R +r2.3 MB
102WORKDIR /opt/smallmodels/ont_r104175 B
103ADD 11d80588db52783f4f6c53b6ea7a65c63dd941dede792edfac3e685ca2bae9ff in . 292 B
104ADD fe5a6336be8809cccfd1ba4e07afeca68aad818c4532010f670d6c8e1cc33e27 in . 7.86 KB
105ADD c394eaec9f5708637974ce28b4e99e33516213754c0535a03ad5e42b0e2bf268 in . 1.02 KB
106WORKDIR /opt/smallmodels/ont_r104/variables196 B
107ADD 0f34369e7ab0fb804cbc152c01c7023a73fd69d3104ab0834870b587df9f7e97 in . 2.31 MB
108ADD bf34ebc204b160d2988b6ffecdb08fbc4fa1093a86c33c6729ada8860afef55e in . 548 B
109/bin/sh -c chmod -R +r2.32 MB
110ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/opt/conda/envs/bio/bin:/opt/deepvariant/bin0 B
111/bin/sh -c apt-get -y update35.65 MB
112WORKDIR /opt/deepvariant0 B
113CMD ["/opt/deepvariant/bin/run_deepvariant" "--help"]0 B

Command

 ARG RELEASE