google/deepsomatic:v17_rc1_08082024-gpu

Manifest digest

sha256:e1785a7eb06b18d861b23929811de3eda3ab132c115ab50fb9d6633053612e31

OS/ARCH

linux/amd64

Compressed size

16.41 GB

Last pushed

about 2 years by pichuan

Type

Image

Manifest digest

sha256:e1785a7eb06b18d861b23929811de3eda3ab132c115ab50fb9d6633053612e31

Image Layers

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=22.040 B

5ADD file ... in / 29.03 MB

6CMD ["/bin/bash"]0 B

7ENV NVARCH=x86_640 B

8

ENV NVIDIA_REQUIRE_CUDA=cuda>=11.8 brand=tesla,driver>=470,driver<471 brand=unknown,driver>=470,driver<471 brand=nvidia,driver>=470,driver<471

0 B

9ENV NV_CUDA_CUDART_VERSION=11.8.89-10 B

10ENV NV_CUDA_COMPAT_PACKAGE=cuda-compat-11-80 B

11ARG TARGETARCH0 B

12LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

13RUN |1 TARGETARCH=amd64 /bin/sh -c4.41 MB

14ENV CUDA_VERSION=11.8.00 B

15RUN |1 TARGETARCH=amd64 /bin/sh -c53.62 MB

16RUN |1 TARGETARCH=amd64 /bin/sh -c188 B

17ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

18ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B

19COPY NGC-DL-CONTAINER-LICENSE / # buildkit6.72 KB

20ENV NVIDIA_VISIBLE_DEVICES=all0 B

21ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility0 B

22ENV NV_CUDA_LIB_VERSION=11.8.0-10 B

23ENV NV_NVTX_VERSION=11.8.86-10 B

24ENV NV_LIBNPP_VERSION=11.8.0.86-10 B

25ENV NV_LIBNPP_PACKAGE=libnpp-11-8=11.8.0.86-10 B

26ENV NV_LIBCUSPARSE_VERSION=11.7.5.86-10 B

27ENV NV_LIBCUBLAS_PACKAGE_NAME=libcublas-11-80 B

28ENV NV_LIBCUBLAS_VERSION=11.11.3.6-10 B

29ENV NV_LIBCUBLAS_PACKAGE=libcublas-11-8=11.11.3.6-10 B

30ENV NV_LIBNCCL_PACKAGE_NAME=libnccl20 B

31ENV NV_LIBNCCL_PACKAGE_VERSION=2.15.5-10 B

32ENV NCCL_VERSION=2.15.5-10 B

33ENV NV_LIBNCCL_PACKAGE=libnccl2=2.15.5-1+cuda11.80 B

34ARG TARGETARCH0 B

35LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

36RUN |1 TARGETARCH=amd64 /bin/sh -c1.28 GB

37RUN |1 TARGETARCH=amd64 /bin/sh -c62.2 KB

38COPY entrypoint.d/ /opt/nvidia/entrypoint.d/ # buildkit1.65 KB

39COPY nvidia_entrypoint.sh /opt/nvidia/ # buildkit1.49 KB

40ENV NVIDIA_PRODUCT_NAME=CUDA0 B

41ENTRYPOINT ["/opt/nvidia/nvidia_entrypoint.sh"]0 B

42ENV NV_CUDA_LIB_VERSION=11.8.0-10 B

43ENV NV_CUDA_CUDART_DEV_VERSION=11.8.89-10 B

44ENV NV_NVML_DEV_VERSION=11.8.86-10 B

45ENV NV_LIBCUSPARSE_DEV_VERSION=11.7.5.86-10 B

46ENV NV_LIBNPP_DEV_VERSION=11.8.0.86-10 B

47ENV NV_LIBNPP_DEV_PACKAGE=libnpp-dev-11-8=11.8.0.86-10 B

48ENV NV_LIBCUBLAS_DEV_VERSION=11.11.3.6-10 B

49ENV NV_LIBCUBLAS_DEV_PACKAGE_NAME=libcublas-dev-11-80 B

50ENV NV_LIBCUBLAS_DEV_PACKAGE=libcublas-dev-11-8=11.11.3.6-10 B

51ENV NV_CUDA_NSIGHT_COMPUTE_VERSION=11.8.0-10 B

52ENV NV_CUDA_NSIGHT_COMPUTE_DEV_PACKAGE=cuda-nsight-compute-11-8=11.8.0-10 B

53ENV NV_NVPROF_VERSION=11.8.87-10 B

54ENV NV_NVPROF_DEV_PACKAGE=cuda-nvprof-11-8=11.8.87-10 B

55ENV NV_LIBNCCL_DEV_PACKAGE_NAME=libnccl-dev0 B

56ENV NV_LIBNCCL_DEV_PACKAGE_VERSION=2.15.5-10 B

57ENV NCCL_VERSION=2.15.5-10 B

58ENV NV_LIBNCCL_DEV_PACKAGE=libnccl-dev=2.15.5-1+cuda11.80 B

59ARG TARGETARCH0 B

60LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

61RUN |1 TARGETARCH=amd64 /bin/sh -c2.29 GB

62RUN |1 TARGETARCH=amd64 /bin/sh -c86.16 KB

63ENV LIBRARY_PATH=/usr/local/cuda/lib64/stubs0 B

64ENV NV_CUDNN_VERSION=8.9.6.500 B

65ENV NV_CUDNN_PACKAGE_NAME=libcudnn80 B

66ENV NV_CUDNN_PACKAGE=libcudnn8=8.9.6.50-1+cuda11.80 B

67ENV NV_CUDNN_PACKAGE_DEV=libcudnn8-dev=8.9.6.50-1+cuda11.80 B

68ARG TARGETARCH0 B

69LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

70LABEL com.nvidia.cudnn.version=8.9.6.500 B

71RUN |1 TARGETARCH=amd64 /bin/sh -c1.34 GB

72ARG DV_GPU_BUILD0 B

73ARG VERSION_DEEPSOMATIC0 B

74ARG PYTHON_VERSION0 B

75ARG TF_ENABLE_ONEDNN_OPTS0 B

76ENV DV_GPU_BUILD=10 B

77ENV VERSION_DEEPSOMATIC=1.7.0-rc00 B

78ENV PYTHON_VERSION=3.100 B

79ENV TF_ENABLE_ONEDNN_OPTS=10 B

80WORKDIR /opt/0 B

81COPY file:162e71495a3a353a5d36fea8cb69bafd6a4224ae00891f17467b1a5dcd41dd0c in . 19.41 KB

82WORKDIR /opt/deepvariant/bin/166 B

83COPY dir:f789da686b09cf0c3c4ebe1c02182c2229f251c4ca5147c8a10d2a37d3cf34f3 in /opt/conda 217.56 MB

84COPY file:8de5b14e1428b264a22d3a04e6f02b8842c97a84c3f0bbdc88fede96e6e9785d in . 4.68 KB

85COPY file:cbd3e7d80662f21e279a5e0ef1fa58d1f675f6cb8fe4fb44a3b7a38b4e99c6d2 in . 2.89 KB

86COPY file:a669f322a9f4580d6fc31bdcafa20e7a6dc0aad2cdbd92e285b93dbda8bfa857 in . 7.84 MB

87COPY file:073deb96c8b5bd4bbc1047dd78d57103c345bc785af227baf8d7f4d9cc33c943 in . 7.77 MB

88COPY file:43a1462414296e2a0766247eb4e973c609824d885b49a7248eebf8a15729149d in . 7.76 MB

89COPY file:6208df5db1af44c48379d837dbc26c1151522af46c1b14ba08bbbe0f8c7ea0e9 in . 7.68 MB

90COPY file:5f06b25aa9c87cdd9e58dc8bdde32ed8d0a3a10e8b10afbcaf13ab2df2aa79aa in . 7.69 MB

91COPY file:bbf55e3e6158a43b25c3c37b2f05ed20371bb00d2718eda2324daf6917e28268 in . 133.81 KB

92COPY file:f1911e97f070f1339de2359cd61979d560aca656053cc6dd11c3c9510c66ff54 in ./deepsomatic/ 8.21 KB

93/bin/sh -c ./run-prereq.sh6.77 GB

94/bin/sh -c update-alternatives --install /usr/bin/python31.93 KB

95/bin/sh -c BASH_HEADER='#!/bin/bash' && 454 B

96WORKDIR /opt/models/deepsomatic/wgs184 B

97ADD 39a9f7f773c148cf2930732742fcbd3a08d436096d54fd7a160d6b61d54719a3 in . 277 B

98ADD 4cec231e4bdd38c95da4c16b80023478142d44f748b8c4802284080298d3c0fe in . 341.95 KB

99ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 271 B

100WORKDIR /opt/models/deepsomatic/wgs/variables209 B

101ADD 22076a35f166245a1109a3654089fa5619fd1bf78c986489a885d759022f2dd1 in . 76.22 MB

102ADD a3f223f97b0e5bf5d41302d78ee98eb9687941c90856de581bd5ea1174fcad92 in . 5.99 KB

103/bin/sh -c chmod -R +r76.56 MB

104WORKDIR /opt/models/deepsomatic/wes188 B

105ADD 8bf33bf2b8fe28cdafa162643295ba23805224be8b64e88134425d0f0945e992 in . 285 B

106ADD 4cec231e4bdd38c95da4c16b80023478142d44f748b8c4802284080298d3c0fe in . 341.96 KB

107ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 274 B

108WORKDIR /opt/models/deepsomatic/wes/variables208 B

109ADD eb6ec92b1bf2bf49bc954efd35606e33e6dd794c6592d4187bef6597b8be3fe7 in . 77.58 MB

110ADD eac89f92611d5bdf435a6a9e73836e52a5f24ac0b67bb0d7d9a004aa006c3d58 in . 5.96 KB

111/bin/sh -c chmod -R +r77.92 MB

112WORKDIR /opt/models/deepsomatic/pacbio191 B

113ADD 9de329ce695242443564dee183e42d778f2d68d8a2915bd1b9eb94dc38c03a5b in . 288 B

114ADD 2145336fc969b9c321737b8c594fc85371a81f6253bcc9799f82e7e54c760aac in . 341.67 KB

115ADD 3cb161b71dde9ad5d28796bb2b7d1cda9ef8e25001bc89e03189f0059baa7465 in . 282 B

116WORKDIR /opt/models/deepsomatic/pacbio/variables214 B

117ADD 0a9db740835eb6c0181c459c84d3cab65f23099527198ef0f63c3fa0b511d4e8 in . 76.26 MB

118ADD 9ef52ee852c0d64b7d1614f8880d001cc8d976e83762bf0a00cb484d433a3423 in . 5.98 KB

119/bin/sh -c chmod -R +r76.6 MB

120WORKDIR /opt/models/deepsomatic/ont188 B

121ADD e0218a1b0e9567b43d903e3f56deadf834fe966941caafd77585af3ad851eae1 in . 282 B

122ADD 2145336fc969b9c321737b8c594fc85371a81f6253bcc9799f82e7e54c760aac in . 341.67 KB

123ADD 3cb161b71dde9ad5d28796bb2b7d1cda9ef8e25001bc89e03189f0059baa7465 in . 280 B

124WORKDIR /opt/models/deepsomatic/ont/variables213 B

125ADD 491eace99cbea697d2c8a95a2337d450d1969c9f6ec368b1a40d62a7b7e78fce in . 76.58 MB

126ADD c7b5f53128927417fb8712d4113bddfa3d5626b92153078e13805a2439b6a98b in . 5.97 KB

127/bin/sh -c chmod -R +r76.92 MB

128WORKDIR /opt/models/deepsomatic/ffpe_wgs194 B

129ADD a639b8e1758220c193a392fc1a6a223a2ce82ba053ac42e35affdf3d6d3d36f1 in . 293 B

130ADD 4cec231e4bdd38c95da4c16b80023478142d44f748b8c4802284080298d3c0fe in . 341.97 KB

131ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 282 B

132WORKDIR /opt/models/deepsomatic/ffpe_wgs/variables216 B

133ADD f25a142bf430823c2639a8404bc047b3f2c5401c82563195c8a3d73519c765ca in . 77.38 MB

134ADD c04918fec7d4d780b066d13953f89dc8272b562937db6be64845e060361b3609 in . 5.96 KB

135/bin/sh -c chmod -R +r77.72 MB

136WORKDIR /opt/models/deepsomatic/ffpe_wes194 B

137ADD 6ae27f00aaa73f4c5296bd94002f3173bc5b2faa85bb0b0c0c0ccdca07ee5631 in . 290 B

138ADD 4cec231e4bdd38c95da4c16b80023478142d44f748b8c4802284080298d3c0fe in . 341.96 KB

139ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 278 B

140WORKDIR /opt/models/deepsomatic/ffpe_wes/variables212 B

141ADD bec6fd4f80fffdb89ec3cb1141c19852b513cffe0c5dc1296596807abb8fb9f3 in . 77.61 MB

142ADD fa47ff74d2f8bd3f831083a26f0c6c94ae6faf45972021598cc731efff1431d2 in . 5.96 KB

143/bin/sh -c chmod -R +r77.95 MB

144WORKDIR /opt/models/deepsomatic/wgs_tumor_only200 B

145ADD 2afff0eb8cc615ad5ae72b943aef32c1a0941bc36dd3a9401791ce50760eb941 in . 299 B

146ADD 9d8cdab9a859490933d9d35622b6116ecde35ec447dfafde110fa8b476dff35d in . 341.75 KB

147ADD 8e86459f02e4ceefa65576ca7dec690612255aa60a01fe0636c2278d6d1813b3 in . 284 B

148WORKDIR /opt/models/deepsomatic/wgs_tumor_only/variables219 B

149ADD 2827654926dcc8b395c5f3d9bdd83bb1f53eb2a6e4cf61fe67c2471a46e3d609 in . 77.14 MB

150ADD 8f2121715c2787bc2ba9d784b6d4d08bc36226201ae2121d8284b34e7fc612ee in . 6.02 KB

151/bin/sh -c chmod -R +r77.48 MB

152WORKDIR /opt/models/deepsomatic/pacbio_tumor_only204 B

153ADD edf14fbad5c95c586324796b56dafed7a24145067cf75fb8d33357f65cbd8d0c in . 305 B

154ADD a6b56e0c4218e4b1b69c2cc1da891dec69ff1a1f920fdb05245d4336f87a1264 in . 341.71 KB

155ADD a08b0cfa04c47bd872bb1ddd586a779f9e040122d3f4443a3aadfa35a83439fa in . 292 B

156WORKDIR /opt/models/deepsomatic/pacbio_tumor_only/variables226 B

157ADD d3f85cdfdd4e2746f9cdfcacd6b662b2cea6d1b0cdc4648343b370d93d43847d in . 77.2 MB

158ADD 4ef03d7eb6257e5f23cded1585d69ea365fb9d1a08c3943fb3304a7804c48f58 in . 6.02 KB

159/bin/sh -c chmod -R +r77.54 MB

160WORKDIR /opt/models/deepsomatic/ont_tumor_only200 B

161ADD 3836c77406bbd3dc074e9d9ff6fc602f492fc42efe519e83db5f626fa11ebc61 in . 300 B

162ADD a6b56e0c4218e4b1b69c2cc1da891dec69ff1a1f920fdb05245d4336f87a1264 in . 341.7 KB

163ADD a08b0cfa04c47bd872bb1ddd586a779f9e040122d3f4443a3aadfa35a83439fa in . 288 B

164WORKDIR /opt/models/deepsomatic/ont_tumor_only/variables222 B

165ADD f20c2d85aba903c254c008d4da09bbb638f4e7dbf31ba4a5a9afcee77102f306 in . 76.8 MB

166ADD d4bdfce465501ce49c118051b50602b168584315814d9dbc713012156dc7a298 in . 6.01 KB

167/bin/sh -c chmod -R +r77.14 MB

168WORKDIR /opt/models/deepsomatic/pons190 B

169ADD a502041636a40133f60308d91f6c87638c1133a1bc96a68398520e2b8b4a3793 in . 110.76 MB

170ADD 77d72c98ac97222823ec39fc70dce19a0b554692561129a373ffef61d90bb174 in . 1.53 MB

171ADD 74e11eb2dd51a4ca3a690ee9d0291085a95c8edc56658b916c24bb0fa9230ba1 in . 253.83 MB

172ADD 0a102ff9d8c26ba104d7bdc5ea335acb908314bb66701756682e7a2f2ca7ff93 in . 1.6 MB

173ADD a94c67dbef012a43cf9c22f246348f94ddf3ecbbc3352636b7e05ea7c96d26a4 in . 570.69 MB

174ADD 6aef6c1ee70582abba00adf8482d1f0c9ace46de0492c4799e9569554a73a68c in . 1.67 MB

175ADD c0a8769339d9830c78f611341d190a8bb822713146db843e5538c5d7a7250364 in . 599.87 MB

176ADD f2b0a868805ddcd8c621becfb8979056d1d0e44e62809950d148350c78469bf3 in . 1.69 MB

177/bin/sh -c chmod -R +r1.51 GB

178

ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/opt/conda/envs/bio/bin:/opt/deepvariant/bin/deepsomatic:/opt/deepvariant/bin

0 B

179/bin/sh -c apt-get -y update20.55 MB

180WORKDIR /opt/deepvariant0 B

181CMD ["/opt/deepvariant/bin/deepsomatic/run_deepsomatic" "--help"]0 B

Command

 ARG RELEASE