google/deepsomatic:1.8.0-rc5

Manifest digest

sha256:baecf618921d3ad29336c78fda266158b4a1023fc3132710be38f9ad73fef35c

OS/ARCH

linux/amd64

Compressed size

7.36 GB

Last pushed

almost 2 years by pichuan

Type

Image

Manifest digest

sha256:baecf618921d3ad29336c78fda266158b4a1023fc3132710be38f9ad73fef35c

Image Layers

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=22.040 B

5ADD file ... in / 29.03 MB

6CMD ["/bin/bash"]0 B

7ARG DV_GPU_BUILD0 B

8ARG VERSION_DEEPSOMATIC0 B

9ARG PYTHON_VERSION0 B

10ARG TF_ENABLE_ONEDNN_OPTS0 B

11ENV DV_GPU_BUILD=00 B

12ENV VERSION_DEEPSOMATIC=1.8.00 B

13ENV PYTHON_VERSION=3.100 B

14ENV TF_ENABLE_ONEDNN_OPTS=10 B

15WORKDIR /opt/0 B

16COPY file:22d159754cf34c719d5caa99fb4afcf9bbc525e549a7194c4e28b6ee2f91931a in . 21.98 KB

17WORKDIR /opt/deepvariant/bin/167 B

18COPY dir:9ca0648275b4b8862660fba75ed22698fa5c988173d34c1610a03955ba09d195 in /opt/conda 219.3 MB

19COPY file:5c11d8e4a131b53936ae26e4fe1f702db76a99640958aa84d0149df82edbc284 in . 4.86 KB

20COPY file:cbd3e7d80662f21e279a5e0ef1fa58d1f675f6cb8fe4fb44a3b7a38b4e99c6d2 in . 2.89 KB

21COPY file:9309abfa677b2989c10d066d5e58078f57fb316f14326edbb21e4e64bce80907 in . 8.71 MB

22COPY file:b0952b5be8a95901fdc5429b8cc5e3697a98dd3e27e310e41cb228132eef6193 in . 8.64 MB

23COPY file:8be627c4263f786cfec7534fb171e2b388afaadd2a86ac59d03e8f70e386b317 in . 8.62 MB

24COPY file:2324959e6edd3cecec3a6912d6ee7fdd88e5d3bb915597da20f6c54b879fc35d in . 8.55 MB

25COPY file:a477a7cedb24c96f5da09ef844607a902e8db4bf9f7fa22ec598947b24c5306a in . 8.56 MB

26COPY file:f3ab25fbfef4b7ab241e850277c4b62f93905a5ea016b32f9a0d9fd0d1c0e029 in . 133.92 KB

27COPY file:8c136dad17c48e95d50f2e166a2e16357f4fa22c66a43f88d7458d92603b7a9c in ./deepsomatic/ 8.28 KB

28/bin/sh -c ./run-prereq.sh2.67 GB

29/bin/sh -c update-alternatives --install /usr/bin/python31.45 KB

30/bin/sh -c BASH_HEADER='#!/bin/bash' && 451 B

31WORKDIR /opt/models/deepsomatic/wgs184 B

32ADD e578db333cd5d43594bdcccb3f9a04b0d27db4742f5a8e063d3f5082f71e4b9e in . 278 B

33ADD 2e0e7e64860e9ee58044179916399e8c58210838bcb789458a28712f2fba4221 in . 341.95 KB

34ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 275 B

35WORKDIR /opt/models/deepsomatic/wgs/variables209 B

36ADD 22076a35f166245a1109a3654089fa5619fd1bf78c986489a885d759022f2dd1 in . 76.22 MB

37ADD a3f223f97b0e5bf5d41302d78ee98eb9687941c90856de581bd5ea1174fcad92 in . 5.99 KB

38/bin/sh -c chmod -R +r76.56 MB

39WORKDIR /opt/models/deepsomatic/wes190 B

40ADD 002a4cd8e3b47732cd544fd960e110e4ee4f7ba3527d25141662c86c297001b2 in . 290 B

41ADD 2e0e7e64860e9ee58044179916399e8c58210838bcb789458a28712f2fba4221 in . 341.96 KB

42ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 276 B

43WORKDIR /opt/models/deepsomatic/wes/variables212 B

44ADD eb6ec92b1bf2bf49bc954efd35606e33e6dd794c6592d4187bef6597b8be3fe7 in . 77.58 MB

45ADD eac89f92611d5bdf435a6a9e73836e52a5f24ac0b67bb0d7d9a004aa006c3d58 in . 5.97 KB

46/bin/sh -c chmod -R +r77.92 MB

47WORKDIR /opt/models/deepsomatic/pacbio192 B

48ADD 59c5129612e9bc6e381afdd2443c5c34a85f42ef588863cc07cf19c74fb49445 in . 290 B

49ADD 835fdcdb63a742abd8a587e28bc6db3e685cdc830143ed24b26a86d391145f3a in . 341.73 KB

50ADD bb374f8a2d1b4d901fd3875ba160dd97c46136a7583389d3a192e78ec686a8f7 in . 282 B

51WORKDIR /opt/models/deepsomatic/pacbio/variables214 B

52ADD a641ef6d50f44c3eeaf8336e0ad4b24eb47714450c0cd6641a988ed97d358eea in . 76.43 MB

53ADD 105ac0aac8290ff483ad6fe6ab4cf76330769149c8b070801f24a187412b7324 in . 6.02 KB

54/bin/sh -c chmod -R +r76.77 MB

55WORKDIR /opt/models/deepsomatic/ont189 B

56ADD f74c48917765467882186fff5102c19a9897f6e6da27885d72d6685675a5fbd4 in . 287 B

57ADD 835fdcdb63a742abd8a587e28bc6db3e685cdc830143ed24b26a86d391145f3a in . 341.73 KB

58ADD bb374f8a2d1b4d901fd3875ba160dd97c46136a7583389d3a192e78ec686a8f7 in . 280 B

59WORKDIR /opt/models/deepsomatic/ont/variables214 B

60ADD abec04eb910c2bfb472f66faf94814c1a9782979d073fcb434ac20238e298cbc in . 76.12 MB

61ADD d26056d2edbdd2d6345beac92ef4a35483039221ce3b427e78abbdeb38fb0915 in . 6.01 KB

62/bin/sh -c chmod -R +r76.46 MB

63WORKDIR /opt/models/deepsomatic/ffpe_wgs196 B

64ADD a00f0798d2c05eef8d5f99b0f7e5fcd1a1656518f56ffde5b448e31c4eedf5a1 in . 294 B

65ADD 2e0e7e64860e9ee58044179916399e8c58210838bcb789458a28712f2fba4221 in . 341.97 KB

66ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 281 B

67WORKDIR /opt/models/deepsomatic/ffpe_wgs/variables217 B

68ADD f25a142bf430823c2639a8404bc047b3f2c5401c82563195c8a3d73519c765ca in . 77.38 MB

69ADD c04918fec7d4d780b066d13953f89dc8272b562937db6be64845e060361b3609 in . 5.97 KB

70/bin/sh -c chmod -R +r77.72 MB

71WORKDIR /opt/models/deepsomatic/ffpe_wes196 B

72ADD 7bafb45ea1201c1b3d04e4cd25cfd7b8202a49bb4390a84231c05662d51ce701 in . 292 B

73ADD 2e0e7e64860e9ee58044179916399e8c58210838bcb789458a28712f2fba4221 in . 341.97 KB

74ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 281 B

75WORKDIR /opt/models/deepsomatic/ffpe_wes/variables216 B

76ADD bec6fd4f80fffdb89ec3cb1141c19852b513cffe0c5dc1296596807abb8fb9f3 in . 77.61 MB

77ADD fa47ff74d2f8bd3f831083a26f0c6c94ae6faf45972021598cc731efff1431d2 in . 5.97 KB

78/bin/sh -c chmod -R +r77.95 MB

79WORKDIR /opt/models/deepsomatic/wgs_tumor_only201 B

80ADD 63983bf99243c10a1454748ea4760242512378c3662723f4e56e9bf02ab249ef in . 301 B

81ADD d5371e35d9007dc032232cc5d65d9bc846a533b9b14a61eca2b89aaf168ee24a in . 341.75 KB

82ADD 8e86459f02e4ceefa65576ca7dec690612255aa60a01fe0636c2278d6d1813b3 in . 288 B

83WORKDIR /opt/models/deepsomatic/wgs_tumor_only/variables226 B

84ADD 2827654926dcc8b395c5f3d9bdd83bb1f53eb2a6e4cf61fe67c2471a46e3d609 in . 77.14 MB

85ADD 8f2121715c2787bc2ba9d784b6d4d08bc36226201ae2121d8284b34e7fc612ee in . 6.02 KB

86/bin/sh -c chmod -R +r77.48 MB

87WORKDIR /opt/models/deepsomatic/pacbio_tumor_only203 B

88ADD b7981000f52c0f0d3885179854232fbb144497eeed9535c978bad13a721bb1e8 in . 302 B

89ADD f65b57c196c0695b407eab54f2e670b99f04e2bec70246cd170d2e93c12f81e1 in . 341.35 KB

90ADD 5d57f1fb6a0967775d8c8cd1cdf36a384b7226577f1a84320dc4c1dacdf069aa in . 293 B

91WORKDIR /opt/models/deepsomatic/pacbio_tumor_only/variables227 B

92ADD 97a44b98e873a0c335b144a148a771b500594d678419640ee9e4e966ca1248bb in . 76.36 MB

93ADD b5dd86d92180a83dbd65c60ad7085e7bfb8543727fdb92e8ab84d8dd1b1a9582 in . 5.99 KB

94/bin/sh -c chmod -R +r76.7 MB

95WORKDIR /opt/models/deepsomatic/ont_tumor_only200 B

96ADD 4fac299a64394fb2ebaa09d0d3375adac08d0f8469b1c01c7b1990c5808fe8d4 in . 298 B

97ADD f65b57c196c0695b407eab54f2e670b99f04e2bec70246cd170d2e93c12f81e1 in . 341.35 KB

98ADD 5d57f1fb6a0967775d8c8cd1cdf36a384b7226577f1a84320dc4c1dacdf069aa in . 288 B

99WORKDIR /opt/models/deepsomatic/ont_tumor_only/variables221 B

100ADD a9e157773d2f7df3adbeeeaf2157dca7f11a9ea1f828886c4546d34116b3ff77 in . 76.58 MB

101ADD 95c68bb78700d1e5ced49675fe82cf4d4cf26a0eb91574a5e66e92683b129f49 in . 6.03 KB

102/bin/sh -c chmod -R +r76.92 MB

103WORKDIR /opt/models/deepsomatic/pons191 B

104ADD 101c5c18a6f1bd06aed941b5d4d93fc5baa4cac7fa5da56ad37dce0b70bccbf5 in . 110.76 MB

105ADD d574593a8fbce0080b0019daab444969bcf591ce823887f5afc0314d4fea2dd0 in . 1.53 MB

106ADD 74e11eb2dd51a4ca3a690ee9d0291085a95c8edc56658b916c24bb0fa9230ba1 in . 253.83 MB

107ADD 0a102ff9d8c26ba104d7bdc5ea335acb908314bb66701756682e7a2f2ca7ff93 in . 1.6 MB

108ADD a94c67dbef012a43cf9c22f246348f94ddf3ecbbc3352636b7e05ea7c96d26a4 in . 570.69 MB

109ADD 6aef6c1ee70582abba00adf8482d1f0c9ace46de0492c4799e9569554a73a68c in . 1.67 MB

110ADD c0a8769339d9830c78f611341d190a8bb822713146db843e5538c5d7a7250364 in . 599.87 MB

111ADD f2b0a868805ddcd8c621becfb8979056d1d0e44e62809950d148350c78469bf3 in . 1.69 MB

112/bin/sh -c chmod -R +r1.51 GB

113

ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/opt/conda/envs/bio/bin:/opt/deepvariant/bin/deepsomatic:/opt/deepvariant/bin

0 B

114/bin/sh -c apt-get -y update35.64 MB

115WORKDIR /opt/deepvariant0 B

116CMD ["/opt/deepvariant/bin/deepsomatic/run_deepsomatic" "--help"]0 B

Command

 ARG RELEASE