google/deepsomatic:1.8.0-orig-gpu

Manifest digest

sha256:8bfdea378f426e2fac186353994ffe453b29e9b7992ca7ee2980ddf01c319228

OS/ARCH

linux/amd64

Compressed size

16.65 GB

Last pushed

over 1 year by pichuan

Type

Image

Manifest digest

sha256:8bfdea378f426e2fac186353994ffe453b29e9b7992ca7ee2980ddf01c319228

Image Layers

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=22.040 B

5ADD file ... in / 29.03 MB

6CMD ["/bin/bash"]0 B

7ENV NVARCH=x86_640 B

8

ENV NVIDIA_REQUIRE_CUDA=cuda>=11.8 brand=tesla,driver>=470,driver<471 brand=unknown,driver>=470,driver<471 brand=nvidia,driver>=470,driver<471

0 B

9ENV NV_CUDA_CUDART_VERSION=11.8.89-10 B

10ENV NV_CUDA_COMPAT_PACKAGE=cuda-compat-11-80 B

11ARG TARGETARCH0 B

12LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

13RUN |1 TARGETARCH=amd64 /bin/sh -c4.41 MB

14ENV CUDA_VERSION=11.8.00 B

15RUN |1 TARGETARCH=amd64 /bin/sh -c53.62 MB

16RUN |1 TARGETARCH=amd64 /bin/sh -c188 B

17ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

18ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B

19COPY NGC-DL-CONTAINER-LICENSE / # buildkit6.72 KB

20ENV NVIDIA_VISIBLE_DEVICES=all0 B

21ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility0 B

22ENV NV_CUDA_LIB_VERSION=11.8.0-10 B

23ENV NV_NVTX_VERSION=11.8.86-10 B

24ENV NV_LIBNPP_VERSION=11.8.0.86-10 B

25ENV NV_LIBNPP_PACKAGE=libnpp-11-8=11.8.0.86-10 B

26ENV NV_LIBCUSPARSE_VERSION=11.7.5.86-10 B

27ENV NV_LIBCUBLAS_PACKAGE_NAME=libcublas-11-80 B

28ENV NV_LIBCUBLAS_VERSION=11.11.3.6-10 B

29ENV NV_LIBCUBLAS_PACKAGE=libcublas-11-8=11.11.3.6-10 B

30ENV NV_LIBNCCL_PACKAGE_NAME=libnccl20 B

31ENV NV_LIBNCCL_PACKAGE_VERSION=2.15.5-10 B

32ENV NCCL_VERSION=2.15.5-10 B

33ENV NV_LIBNCCL_PACKAGE=libnccl2=2.15.5-1+cuda11.80 B

34ARG TARGETARCH0 B

35LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

36RUN |1 TARGETARCH=amd64 /bin/sh -c1.28 GB

37RUN |1 TARGETARCH=amd64 /bin/sh -c62.2 KB

38COPY entrypoint.d/ /opt/nvidia/entrypoint.d/ # buildkit1.65 KB

39COPY nvidia_entrypoint.sh /opt/nvidia/ # buildkit1.49 KB

40ENV NVIDIA_PRODUCT_NAME=CUDA0 B

41ENTRYPOINT ["/opt/nvidia/nvidia_entrypoint.sh"]0 B

42ENV NV_CUDA_LIB_VERSION=11.8.0-10 B

43ENV NV_CUDA_CUDART_DEV_VERSION=11.8.89-10 B

44ENV NV_NVML_DEV_VERSION=11.8.86-10 B

45ENV NV_LIBCUSPARSE_DEV_VERSION=11.7.5.86-10 B

46ENV NV_LIBNPP_DEV_VERSION=11.8.0.86-10 B

47ENV NV_LIBNPP_DEV_PACKAGE=libnpp-dev-11-8=11.8.0.86-10 B

48ENV NV_LIBCUBLAS_DEV_VERSION=11.11.3.6-10 B

49ENV NV_LIBCUBLAS_DEV_PACKAGE_NAME=libcublas-dev-11-80 B

50ENV NV_LIBCUBLAS_DEV_PACKAGE=libcublas-dev-11-8=11.11.3.6-10 B

51ENV NV_CUDA_NSIGHT_COMPUTE_VERSION=11.8.0-10 B

52ENV NV_CUDA_NSIGHT_COMPUTE_DEV_PACKAGE=cuda-nsight-compute-11-8=11.8.0-10 B

53ENV NV_NVPROF_VERSION=11.8.87-10 B

54ENV NV_NVPROF_DEV_PACKAGE=cuda-nvprof-11-8=11.8.87-10 B

55ENV NV_LIBNCCL_DEV_PACKAGE_NAME=libnccl-dev0 B

56ENV NV_LIBNCCL_DEV_PACKAGE_VERSION=2.15.5-10 B

57ENV NCCL_VERSION=2.15.5-10 B

58ENV NV_LIBNCCL_DEV_PACKAGE=libnccl-dev=2.15.5-1+cuda11.80 B

59ARG TARGETARCH0 B

60LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

61RUN |1 TARGETARCH=amd64 /bin/sh -c2.29 GB

62RUN |1 TARGETARCH=amd64 /bin/sh -c86.16 KB

63ENV LIBRARY_PATH=/usr/local/cuda/lib64/stubs0 B

64ENV NV_CUDNN_VERSION=8.9.6.500 B

65ENV NV_CUDNN_PACKAGE_NAME=libcudnn80 B

66ENV NV_CUDNN_PACKAGE=libcudnn8=8.9.6.50-1+cuda11.80 B

67ENV NV_CUDNN_PACKAGE_DEV=libcudnn8-dev=8.9.6.50-1+cuda11.80 B

68ARG TARGETARCH0 B

69LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B

70LABEL com.nvidia.cudnn.version=8.9.6.500 B

71RUN |1 TARGETARCH=amd64 /bin/sh -c1.34 GB

72ARG DV_GPU_BUILD0 B

73ARG VERSION_DEEPSOMATIC0 B

74ARG PYTHON_VERSION0 B

75ARG TF_ENABLE_ONEDNN_OPTS0 B

76ENV DV_GPU_BUILD=10 B

77ENV VERSION_DEEPSOMATIC=1.8.00 B

78ENV PYTHON_VERSION=3.100 B

79ENV TF_ENABLE_ONEDNN_OPTS=10 B

80WORKDIR /opt/0 B

81COPY file:d13bfdf3e10a7dbbc7f49216e2c53c45f56176acdf6afd0c653b109eca46177c in . 21.98 KB

82WORKDIR /opt/deepvariant/bin/167 B

83COPY dir:07663002669e36375ae17b43d0e2f12ba685ed5d7f17fcbe3a97750898761bb9 in /opt/conda 219.3 MB

84COPY file:5c11d8e4a131b53936ae26e4fe1f702db76a99640958aa84d0149df82edbc284 in . 4.86 KB

85COPY file:cbd3e7d80662f21e279a5e0ef1fa58d1f675f6cb8fe4fb44a3b7a38b4e99c6d2 in . 2.89 KB

86COPY file:f5bf8bdcec0db6200b8c24f7963c961cc1433f25d81f3c73a4f11ce02d876401 in . 8.71 MB

87COPY file:350100ff8f08669a32e77491d5e43677120fb4c156e34210ced9c38ae3cb3751 in . 8.64 MB

88COPY file:82d4c8cc6e01c023ea9d2f9c2da63b2ce94c0f07ab563687121962f3d7de36b9 in . 8.62 MB

89COPY file:3872bdb987eb6308a77fb2a98303e054f882e7e15be8393d7f8812a8693b6499 in . 8.55 MB

90COPY file:f1ab720d8517e857832be3af8588d7826bac1c5f5c07f9de8a97f82e35081471 in . 8.56 MB

91COPY file:d6aeceaecd08c2639ba3b8e20666cc47e962fba1d282fc0e418e3190326679f3 in . 133.92 KB

92COPY file:8c136dad17c48e95d50f2e166a2e16357f4fa22c66a43f88d7458d92603b7a9c in ./deepsomatic/ 8.27 KB

93/bin/sh -c ./run-prereq.sh7.01 GB

94/bin/sh -c update-alternatives --install /usr/bin/python31.93 KB

95/bin/sh -c BASH_HEADER='#!/bin/bash' && 452 B

96WORKDIR /opt/models/deepsomatic/wgs184 B

97ADD e578db333cd5d43594bdcccb3f9a04b0d27db4742f5a8e063d3f5082f71e4b9e in . 277 B

98ADD 2e0e7e64860e9ee58044179916399e8c58210838bcb789458a28712f2fba4221 in . 341.95 KB

99ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 274 B

100WORKDIR /opt/models/deepsomatic/wgs/variables208 B

101ADD 22076a35f166245a1109a3654089fa5619fd1bf78c986489a885d759022f2dd1 in . 76.22 MB

102ADD a3f223f97b0e5bf5d41302d78ee98eb9687941c90856de581bd5ea1174fcad92 in . 5.99 KB

103/bin/sh -c chmod -R +r76.56 MB

104WORKDIR /opt/models/deepsomatic/wes190 B

105ADD 002a4cd8e3b47732cd544fd960e110e4ee4f7ba3527d25141662c86c297001b2 in . 285 B

106ADD 2e0e7e64860e9ee58044179916399e8c58210838bcb789458a28712f2fba4221 in . 341.95 KB

107ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 275 B

108WORKDIR /opt/models/deepsomatic/wes/variables211 B

109ADD eb6ec92b1bf2bf49bc954efd35606e33e6dd794c6592d4187bef6597b8be3fe7 in . 77.58 MB

110ADD eac89f92611d5bdf435a6a9e73836e52a5f24ac0b67bb0d7d9a004aa006c3d58 in . 5.96 KB

111/bin/sh -c chmod -R +r77.92 MB

112WORKDIR /opt/models/deepsomatic/pacbio191 B

113ADD 59c5129612e9bc6e381afdd2443c5c34a85f42ef588863cc07cf19c74fb49445 in . 289 B

114ADD 835fdcdb63a742abd8a587e28bc6db3e685cdc830143ed24b26a86d391145f3a in . 341.72 KB

115ADD bb374f8a2d1b4d901fd3875ba160dd97c46136a7583389d3a192e78ec686a8f7 in . 282 B

116WORKDIR /opt/models/deepsomatic/pacbio/variables214 B

117ADD a641ef6d50f44c3eeaf8336e0ad4b24eb47714450c0cd6641a988ed97d358eea in . 76.43 MB

118ADD 105ac0aac8290ff483ad6fe6ab4cf76330769149c8b070801f24a187412b7324 in . 6.02 KB

119/bin/sh -c chmod -R +r76.77 MB

120WORKDIR /opt/models/deepsomatic/ont188 B

121ADD f74c48917765467882186fff5102c19a9897f6e6da27885d72d6685675a5fbd4 in . 283 B

122ADD 835fdcdb63a742abd8a587e28bc6db3e685cdc830143ed24b26a86d391145f3a in . 341.72 KB

123ADD bb374f8a2d1b4d901fd3875ba160dd97c46136a7583389d3a192e78ec686a8f7 in . 273 B

124WORKDIR /opt/models/deepsomatic/ont/variables208 B

125ADD abec04eb910c2bfb472f66faf94814c1a9782979d073fcb434ac20238e298cbc in . 76.12 MB

126ADD d26056d2edbdd2d6345beac92ef4a35483039221ce3b427e78abbdeb38fb0915 in . 6 KB

127/bin/sh -c chmod -R +r76.46 MB

128WORKDIR /opt/models/deepsomatic/ffpe_wgs194 B

129ADD a00f0798d2c05eef8d5f99b0f7e5fcd1a1656518f56ffde5b448e31c4eedf5a1 in . 286 B

130ADD 2e0e7e64860e9ee58044179916399e8c58210838bcb789458a28712f2fba4221 in . 341.95 KB

131ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 277 B

132WORKDIR /opt/models/deepsomatic/ffpe_wgs/variables213 B

133ADD f25a142bf430823c2639a8404bc047b3f2c5401c82563195c8a3d73519c765ca in . 77.38 MB

134ADD c04918fec7d4d780b066d13953f89dc8272b562937db6be64845e060361b3609 in . 5.95 KB

135/bin/sh -c chmod -R +r77.72 MB

136WORKDIR /opt/models/deepsomatic/ffpe_wes195 B

137ADD 7bafb45ea1201c1b3d04e4cd25cfd7b8202a49bb4390a84231c05662d51ce701 in . 290 B

138ADD 2e0e7e64860e9ee58044179916399e8c58210838bcb789458a28712f2fba4221 in . 341.96 KB

139ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 277 B

140WORKDIR /opt/models/deepsomatic/ffpe_wes/variables212 B

141ADD bec6fd4f80fffdb89ec3cb1141c19852b513cffe0c5dc1296596807abb8fb9f3 in . 77.61 MB

142ADD fa47ff74d2f8bd3f831083a26f0c6c94ae6faf45972021598cc731efff1431d2 in . 5.96 KB

143/bin/sh -c chmod -R +r77.95 MB

144WORKDIR /opt/models/deepsomatic/wgs_tumor_only199 B

145ADD 63983bf99243c10a1454748ea4760242512378c3662723f4e56e9bf02ab249ef in . 296 B

146ADD d5371e35d9007dc032232cc5d65d9bc846a533b9b14a61eca2b89aaf168ee24a in . 341.74 KB

147ADD 8e86459f02e4ceefa65576ca7dec690612255aa60a01fe0636c2278d6d1813b3 in . 285 B

148WORKDIR /opt/models/deepsomatic/wgs_tumor_only/variables222 B

149ADD 2827654926dcc8b395c5f3d9bdd83bb1f53eb2a6e4cf61fe67c2471a46e3d609 in . 77.14 MB

150ADD 8f2121715c2787bc2ba9d784b6d4d08bc36226201ae2121d8284b34e7fc612ee in . 6.02 KB

151/bin/sh -c chmod -R +r77.48 MB

152WORKDIR /opt/models/deepsomatic/pacbio_tumor_only202 B

153ADD b7981000f52c0f0d3885179854232fbb144497eeed9535c978bad13a721bb1e8 in . 304 B

154ADD f65b57c196c0695b407eab54f2e670b99f04e2bec70246cd170d2e93c12f81e1 in . 341.35 KB

155ADD 5d57f1fb6a0967775d8c8cd1cdf36a384b7226577f1a84320dc4c1dacdf069aa in . 291 B

156WORKDIR /opt/models/deepsomatic/pacbio_tumor_only/variables225 B

157ADD 97a44b98e873a0c335b144a148a771b500594d678419640ee9e4e966ca1248bb in . 76.36 MB

158ADD b5dd86d92180a83dbd65c60ad7085e7bfb8543727fdb92e8ab84d8dd1b1a9582 in . 5.99 KB

159/bin/sh -c chmod -R +r76.7 MB

160WORKDIR /opt/models/deepsomatic/ont_tumor_only199 B

161ADD 4fac299a64394fb2ebaa09d0d3375adac08d0f8469b1c01c7b1990c5808fe8d4 in . 298 B

162ADD f65b57c196c0695b407eab54f2e670b99f04e2bec70246cd170d2e93c12f81e1 in . 341.35 KB

163ADD 5d57f1fb6a0967775d8c8cd1cdf36a384b7226577f1a84320dc4c1dacdf069aa in . 287 B

164WORKDIR /opt/models/deepsomatic/ont_tumor_only/variables223 B

165ADD a9e157773d2f7df3adbeeeaf2157dca7f11a9ea1f828886c4546d34116b3ff77 in . 76.58 MB

166ADD 95c68bb78700d1e5ced49675fe82cf4d4cf26a0eb91574a5e66e92683b129f49 in . 6.03 KB

167/bin/sh -c chmod -R +r76.92 MB

168WORKDIR /opt/models/deepsomatic/pons191 B

169ADD 101c5c18a6f1bd06aed941b5d4d93fc5baa4cac7fa5da56ad37dce0b70bccbf5 in . 110.76 MB

170ADD d574593a8fbce0080b0019daab444969bcf591ce823887f5afc0314d4fea2dd0 in . 1.53 MB

171ADD 74e11eb2dd51a4ca3a690ee9d0291085a95c8edc56658b916c24bb0fa9230ba1 in . 253.83 MB

172ADD 0a102ff9d8c26ba104d7bdc5ea335acb908314bb66701756682e7a2f2ca7ff93 in . 1.6 MB

173ADD a94c67dbef012a43cf9c22f246348f94ddf3ecbbc3352636b7e05ea7c96d26a4 in . 570.69 MB

174ADD 6aef6c1ee70582abba00adf8482d1f0c9ace46de0492c4799e9569554a73a68c in . 1.67 MB

175ADD c0a8769339d9830c78f611341d190a8bb822713146db843e5538c5d7a7250364 in . 599.87 MB

176ADD f2b0a868805ddcd8c621becfb8979056d1d0e44e62809950d148350c78469bf3 in . 1.69 MB

177/bin/sh -c chmod -R +r1.51 GB

178

ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/opt/conda/envs/bio/bin:/opt/deepvariant/bin/deepsomatic:/opt/deepvariant/bin

0 B

179/bin/sh -c apt-get -y update20.55 MB

180WORKDIR /opt/deepvariant0 B

181CMD ["/opt/deepvariant/bin/deepsomatic/run_deepsomatic" "--help"]0 B

Command

 ARG RELEASE