google/deepsomatic:1.7.0

Manifest digest

sha256:f31741aad52dc64d3e41c823c12ad97fb74dc4eff87e82c126d988b4bf7fed06

OS/ARCH

linux/amd64

Compressed size

7.4 GB

Last pushed

over 1 year by pichuan

Type

Image

Manifest digest

sha256:f31741aad52dc64d3e41c823c12ad97fb74dc4eff87e82c126d988b4bf7fed06

Image Layers

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=22.040 B

5ADD file ... in / 29.03 MB

6CMD ["/bin/bash"]0 B

7ARG DV_GPU_BUILD0 B

8ARG VERSION_DEEPSOMATIC0 B

9ARG PYTHON_VERSION0 B

10ARG TF_ENABLE_ONEDNN_OPTS0 B

11ENV DV_GPU_BUILD=00 B

12ENV VERSION_DEEPSOMATIC=1.7.00 B

13ENV PYTHON_VERSION=3.100 B

14ENV TF_ENABLE_ONEDNN_OPTS=10 B

15WORKDIR /opt/0 B

16COPY file:af7295f1b255c2c385569fef22dc2ec51b9431d07e58bdb0ea54669b914cb7e1 in . 19.41 KB

17WORKDIR /opt/deepvariant/bin/167 B

18COPY dir:97e54a3f3d0649b2949e9c40091070d7d5a20b858fda1a3c7c4eedb797ee6ea9 in /opt/conda 219.69 MB

19COPY file:8de5b14e1428b264a22d3a04e6f02b8842c97a84c3f0bbdc88fede96e6e9785d in . 4.68 KB

20COPY file:cbd3e7d80662f21e279a5e0ef1fa58d1f675f6cb8fe4fb44a3b7a38b4e99c6d2 in . 2.89 KB

21COPY file:ae027d6736b8072bbd9fe6e6413bf5dc033858460b837720c06813c429815c54 in . 7.86 MB

22COPY file:8624415dc6a7e3961eaa4b6457c107b60586a4d4d72820d87bba6495e9ab9f6b in . 7.78 MB

23COPY file:7a739e6354fee4386b2673539d64b37ada46e257431c809ca84df3850c2949e2 in . 7.77 MB

24COPY file:26c910ebdbe891bea2c59c5bdb399b089618af5f7ff40b9b1fbfe4da398d01c7 in . 7.69 MB

25COPY file:168014605d576f54adcb1de627caa7e6a9ed19ff4b58e0dee54c173ff8c49dee in . 7.7 MB

26COPY file:d9a03f0550e1c8a197b30e987d5871581cc85f0af3322aba585e7824f8221511 in . 133.85 KB

27COPY file:786d77c3e7f5ddadca1b7acb432b3b7d382111cf8d586f71ab0f19d81861ee4a in ./deepsomatic/ 8.27 KB

28/bin/sh -c ./run-prereq.sh2.64 GB

29/bin/sh -c update-alternatives --install /usr/bin/python31.46 KB

30/bin/sh -c BASH_HEADER='#!/bin/bash' && 452 B

31WORKDIR /opt/models/deepsomatic/wgs185 B

32ADD e578db333cd5d43594bdcccb3f9a04b0d27db4742f5a8e063d3f5082f71e4b9e in . 280 B

33ADD 2e0e7e64860e9ee58044179916399e8c58210838bcb789458a28712f2fba4221 in . 341.94 KB

34ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 270 B

35WORKDIR /opt/models/deepsomatic/wgs/variables210 B

36ADD 22076a35f166245a1109a3654089fa5619fd1bf78c986489a885d759022f2dd1 in . 76.22 MB

37ADD a3f223f97b0e5bf5d41302d78ee98eb9687941c90856de581bd5ea1174fcad92 in . 5.99 KB

38/bin/sh -c chmod -R +r76.56 MB

39WORKDIR /opt/models/deepsomatic/wes188 B

40ADD 002a4cd8e3b47732cd544fd960e110e4ee4f7ba3527d25141662c86c297001b2 in . 290 B

41ADD 2e0e7e64860e9ee58044179916399e8c58210838bcb789458a28712f2fba4221 in . 341.96 KB

42ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 274 B

43WORKDIR /opt/models/deepsomatic/wes/variables210 B

44ADD eb6ec92b1bf2bf49bc954efd35606e33e6dd794c6592d4187bef6597b8be3fe7 in . 77.58 MB

45ADD eac89f92611d5bdf435a6a9e73836e52a5f24ac0b67bb0d7d9a004aa006c3d58 in . 5.97 KB

46/bin/sh -c chmod -R +r77.92 MB

47WORKDIR /opt/models/deepsomatic/pacbio191 B

48ADD 59c5129612e9bc6e381afdd2443c5c34a85f42ef588863cc07cf19c74fb49445 in . 291 B

49ADD 835fdcdb63a742abd8a587e28bc6db3e685cdc830143ed24b26a86d391145f3a in . 341.73 KB

50ADD bb374f8a2d1b4d901fd3875ba160dd97c46136a7583389d3a192e78ec686a8f7 in . 282 B

51WORKDIR /opt/models/deepsomatic/pacbio/variables214 B

52ADD a641ef6d50f44c3eeaf8336e0ad4b24eb47714450c0cd6641a988ed97d358eea in . 76.43 MB

53ADD 105ac0aac8290ff483ad6fe6ab4cf76330769149c8b070801f24a187412b7324 in . 6.02 KB

54/bin/sh -c chmod -R +r76.77 MB

55WORKDIR /opt/models/deepsomatic/ont189 B

56ADD f74c48917765467882186fff5102c19a9897f6e6da27885d72d6685675a5fbd4 in . 286 B

57ADD 835fdcdb63a742abd8a587e28bc6db3e685cdc830143ed24b26a86d391145f3a in . 341.73 KB

58ADD bb374f8a2d1b4d901fd3875ba160dd97c46136a7583389d3a192e78ec686a8f7 in . 279 B

59WORKDIR /opt/models/deepsomatic/ont/variables210 B

60ADD abec04eb910c2bfb472f66faf94814c1a9782979d073fcb434ac20238e298cbc in . 76.12 MB

61ADD d26056d2edbdd2d6345beac92ef4a35483039221ce3b427e78abbdeb38fb0915 in . 6.01 KB

62/bin/sh -c chmod -R +r76.46 MB

63WORKDIR /opt/models/deepsomatic/ffpe_wgs193 B

64ADD a00f0798d2c05eef8d5f99b0f7e5fcd1a1656518f56ffde5b448e31c4eedf5a1 in . 290 B

65ADD 2e0e7e64860e9ee58044179916399e8c58210838bcb789458a28712f2fba4221 in . 341.96 KB

66ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 281 B

67WORKDIR /opt/models/deepsomatic/ffpe_wgs/variables217 B

68ADD f25a142bf430823c2639a8404bc047b3f2c5401c82563195c8a3d73519c765ca in . 77.38 MB

69ADD c04918fec7d4d780b066d13953f89dc8272b562937db6be64845e060361b3609 in . 5.97 KB

70/bin/sh -c chmod -R +r77.72 MB

71WORKDIR /opt/models/deepsomatic/ffpe_wes195 B

72ADD 7bafb45ea1201c1b3d04e4cd25cfd7b8202a49bb4390a84231c05662d51ce701 in . 293 B

73ADD 2e0e7e64860e9ee58044179916399e8c58210838bcb789458a28712f2fba4221 in . 341.96 KB

74ADD 50ed3b4bacce9b3aef59d0bb9ffaa56cd81e046a5cc00d0e04ba5aeff9282559 in . 278 B

75WORKDIR /opt/models/deepsomatic/ffpe_wes/variables212 B

76ADD bec6fd4f80fffdb89ec3cb1141c19852b513cffe0c5dc1296596807abb8fb9f3 in . 77.61 MB

77ADD fa47ff74d2f8bd3f831083a26f0c6c94ae6faf45972021598cc731efff1431d2 in . 5.97 KB

78/bin/sh -c chmod -R +r77.95 MB

79WORKDIR /opt/models/deepsomatic/wgs_tumor_only200 B

80ADD 63983bf99243c10a1454748ea4760242512378c3662723f4e56e9bf02ab249ef in . 301 B

81ADD d5371e35d9007dc032232cc5d65d9bc846a533b9b14a61eca2b89aaf168ee24a in . 341.74 KB

82ADD 8e86459f02e4ceefa65576ca7dec690612255aa60a01fe0636c2278d6d1813b3 in . 284 B

83WORKDIR /opt/models/deepsomatic/wgs_tumor_only/variables223 B

84ADD 2827654926dcc8b395c5f3d9bdd83bb1f53eb2a6e4cf61fe67c2471a46e3d609 in . 77.14 MB

85ADD 8f2121715c2787bc2ba9d784b6d4d08bc36226201ae2121d8284b34e7fc612ee in . 6.02 KB

86/bin/sh -c chmod -R +r77.48 MB

87WORKDIR /opt/models/deepsomatic/pacbio_tumor_only201 B

88ADD b7981000f52c0f0d3885179854232fbb144497eeed9535c978bad13a721bb1e8 in . 302 B

89ADD f65b57c196c0695b407eab54f2e670b99f04e2bec70246cd170d2e93c12f81e1 in . 341.35 KB

90ADD 5d57f1fb6a0967775d8c8cd1cdf36a384b7226577f1a84320dc4c1dacdf069aa in . 290 B

91WORKDIR /opt/models/deepsomatic/pacbio_tumor_only/variables225 B

92ADD 97a44b98e873a0c335b144a148a771b500594d678419640ee9e4e966ca1248bb in . 76.36 MB

93ADD b5dd86d92180a83dbd65c60ad7085e7bfb8543727fdb92e8ab84d8dd1b1a9582 in . 5.99 KB

94/bin/sh -c chmod -R +r76.7 MB

95WORKDIR /opt/models/deepsomatic/ont_tumor_only200 B

96ADD 4fac299a64394fb2ebaa09d0d3375adac08d0f8469b1c01c7b1990c5808fe8d4 in . 300 B

97ADD f65b57c196c0695b407eab54f2e670b99f04e2bec70246cd170d2e93c12f81e1 in . 341.35 KB

98ADD 5d57f1fb6a0967775d8c8cd1cdf36a384b7226577f1a84320dc4c1dacdf069aa in . 287 B

99WORKDIR /opt/models/deepsomatic/ont_tumor_only/variables222 B

100ADD a9e157773d2f7df3adbeeeaf2157dca7f11a9ea1f828886c4546d34116b3ff77 in . 76.58 MB

101ADD 95c68bb78700d1e5ced49675fe82cf4d4cf26a0eb91574a5e66e92683b129f49 in . 6.03 KB

102/bin/sh -c chmod -R +r76.92 MB

103WORKDIR /opt/models/deepsomatic/pons191 B

104ADD 101c5c18a6f1bd06aed941b5d4d93fc5baa4cac7fa5da56ad37dce0b70bccbf5 in . 110.76 MB

105ADD d574593a8fbce0080b0019daab444969bcf591ce823887f5afc0314d4fea2dd0 in . 1.53 MB

106ADD 74e11eb2dd51a4ca3a690ee9d0291085a95c8edc56658b916c24bb0fa9230ba1 in . 253.83 MB

107ADD 0a102ff9d8c26ba104d7bdc5ea335acb908314bb66701756682e7a2f2ca7ff93 in . 1.6 MB

108ADD a94c67dbef012a43cf9c22f246348f94ddf3ecbbc3352636b7e05ea7c96d26a4 in . 570.69 MB

109ADD 6aef6c1ee70582abba00adf8482d1f0c9ace46de0492c4799e9569554a73a68c in . 1.67 MB

110ADD c0a8769339d9830c78f611341d190a8bb822713146db843e5538c5d7a7250364 in . 599.87 MB

111ADD f2b0a868805ddcd8c621becfb8979056d1d0e44e62809950d148350c78469bf3 in . 1.69 MB

112/bin/sh -c chmod -R +r1.51 GB

113

ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/opt/conda/envs/bio/bin:/opt/deepvariant/bin/deepsomatic:/opt/deepvariant/bin

0 B

114/bin/sh -c apt-get -y update35.64 MB

115WORKDIR /opt/deepvariant0 B

116CMD ["/opt/deepvariant/bin/deepsomatic/run_deepsomatic" "--help"]0 B

117ADD dir:2450c089288e71b3f6b1f344d171cda51502da4bafb8c1d35f9d9858619da576 in /opt/models/deepsomatic/wgs/ 77.57 MB

Command

 ARG RELEASE