genevia/omnideconv:v0.1.1

Manifest digest

sha256:ee4ecd89dc63000bc674e7a32e94558611f22953a66d28e4fcf4debf37f78c58

OS/ARCH

linux/amd64

Compressed size

5.68 GB

Last pushed

10 months by genevia

Type

Image

Manifest digest

sha256:ee4ecd89dc63000bc674e7a32e94558611f22953a66d28e4fcf4debf37f78c58

Image Layers

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=22.040 B

5ADD file ... in / 28.17 MB

6CMD ["/bin/bash"]0 B

7ENV R_VERSION=4.4.00 B

8ENV R_HOME=/usr/local/lib/R0 B

9ENV TZ=Etc/UTC0 B

10COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh # buildkit1.81 KB

11RUN /bin/sh -c /rocker_scripts/install_R_source.sh #260.93 MB

12ENV CRAN=https://p3m.dev/cran/__linux__/jammy/2024-06-130 B

13ENV LANG=en_US.UTF-80 B

14COPY scripts/bin/ /rocker_scripts/bin/ # buildkit2.76 KB

15COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh # buildkit1.49 KB

16RUN /bin/sh -c /rocker_scripts/setup_R.sh #26.29 MB

17CMD ["R"]0 B

18COPY scripts /rocker_scripts # buildkit24.25 KB

19ENV DEBIAN_FRONTEND=noninteractive0 B

20/bin/sh -c apt-get update &&98.94 MB

21/bin/sh -c wget https://github.com/apptainer/apptainer/releases/download/v1.3.4/apptainer_1.3.4_amd64.deb &&45.9 MB

22/bin/sh -c R -e "install.packages('BiocManager',493.72 KB

23/bin/sh -c R -e "BiocManager::install(version9.12 MB

24/bin/sh -c R -e "install.packages('matrixStats',717.95 KB

25/bin/sh -c R -e "BiocManager::install(c('MatrixGenerics',49.44 MB

26/bin/sh -c R -e "install.packages('pak',8.74 MB

27/bin/sh -c R -e "pak::pkg_install(c('tidyverse',279.45 MB

28/bin/sh -c R -e "install.packages('reticulate',483.15 MB

29/bin/sh -c R -e "pak::pkg_install('omnideconv/omnideconv')"905.37 MB

30/bin/sh -c R -e "pak::pkg_install('omnideconv/omnideconv',5.43 MB

31/bin/sh -c R -e "pak::pkg_install('renozao/pkgmaker')"9.92 MB

32/bin/sh -c R -e "pak::pkg_install('omnideconv/MuSiC')"332.34 MB

33/bin/sh -c R -e "pak::pkg_install('omnideconv/BayesPrism')"664.97 MB

34/bin/sh -c R -e "pak::pkg_install('BisqueRNA')"9.36 MB

35/bin/sh -c R -e "pak::pkg_install('omnideconv/bseqsc')"152.76 MB

36/bin/sh -c R -e "pak::pkg_install('omnideconv/CDSeq')"65.79 MB

37/bin/sh -c R -e "pak::pkg_install('omnideconv/DWLS')"7 MB

38/bin/sh -c R -e "pak::pkg_install('omnideconv/MOMF')"41.39 MB

39/bin/sh -c R -e "pak::pkg_install('amitfrish/scBio')"170.28 MB

40/bin/sh -c R -e "pak::pkg_install('omnideconv/SCDC')"691.92 MB

41/bin/sh -c R -e "library(omnideconv)"6.87 KB

42/bin/sh -c /root/.local/share/r-miniconda/envs/r-omnideconv/bin/pip install tensorflow-cpu==2.11.01.43 GB

43/bin/sh -c /root/.local/share/r-miniconda/envs/r-omnideconv/bin/python -c "import0 B

44/bin/sh -c R -e "library(omnideconv);2.55 KB

45WORKDIR /data127 B

46CMD ["R" "-e" "library(omnideconv);0 B

Command

 ARG RELEASE