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genepattern/genepattern-notebook:20.07

Manifest digest

sha256:75b72f603d1ef54d29aa13c1b4894f42bc355e79ca20770936d9f598c4c25e26

OS/ARCH

linux/amd64

Compressed size

6.35 GB

Last pushed

about 6 years by tmtabor

Type

Image

Manifest digest

sha256:75b72f603d1ef54d29aa13c1b4894f42bc355e79ca20770936d9f598c4c25e26

Image Layers

Image Layers

1ADD file ... in / 25.45 MB
2/bin/sh -c [ -z "$(apt-get34.52 KB
3/bin/sh -c set -xe &&849 B
4/bin/sh -c mkdir -p /run/systemd162 B
5CMD ["/bin/bash"]0 B
6LABEL maintainer=Jupyter Project <[email protected]>0 B
7ARG NB_USER=jovyan0 B
8ARG NB_UID=10000 B
9ARG NB_GID=1000 B
10USER root0 B
11ENV DEBIAN_FRONTEND=noninteractive0 B
12|3 NB_GID=100 NB_UID=1000 NB_USER=jovyan /bin/sh10.51 MB
13|3 NB_GID=100 NB_UID=1000 NB_USER=jovyan /bin/sh414.37 KB
14ENV CONDA_DIR=/opt/conda SHELL=/bin/bash NB_USER=jovyan0 B
15ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin HOME=/home/jovyan0 B
16ADD file ... in /usr/local/bin/fix-permissions 666 B
17/bin/sh -c sed -i 's/^#force_color_prompt=yes/force_color_prompt=yes/'1.85 KB
18/bin/sh -c echo "auth requisite5.85 KB
19USER 10000 B
20WORKDIR /home/jovyan0 B
21/bin/sh -c mkdir /home/$NB_USER/work &&148 B
22ENV MINICONDA_VERSION=4.6.14 CONDA_VERSION=4.7.100 B
23/bin/sh -c cd /tmp &&90.25 MB
24/bin/sh -c conda install --quiet11.18 KB
25/bin/sh -c conda install --quiet87.76 MB
26EXPOSE 88880 B
27ENTRYPOINT ["tini" "-g" "--"]0 B
28CMD ["start-notebook.sh"]0 B
29COPY file:be20131ba97563898c30998c19104b0d58d61a982ea5555a2002b0c2f0b49668 in /usr/local/bin/ 2.11 KB
30COPY file:b2c3f5a0f1eb5ccb09652a170a2345d2c65ff31f325fb29250fc500957117659 in /usr/local/bin/ 486 B
31COPY file:f18466c43c93e954cf68e631cbbe61aba2ec666f0dd9a113f97404789f539808 in /usr/local/bin/ 690 B
32COPY file:cd827a3a9853bdea9decd0b6548b957cbe9821532361805d99dee359cfbbd1c0 in /etc/jupyter/ 1005 B
33USER root0 B
34/bin/sh -c fix-permissions /etc/jupyter/1015 B
35USER 10000 B
36LABEL maintainer=Jupyter Project <[email protected]>0 B
37USER root0 B
38/bin/sh -c apt-get update &&773.93 MB
39USER 10000 B
40LABEL maintainer=Jupyter Project <[email protected]>0 B
41USER root0 B
42/bin/sh -c apt-get update &&66.77 MB
43USER 10000 B
44/bin/sh -c conda install --quiet201.07 MB
45/bin/sh -c cd /tmp &&583.08 KB
46ENV XDG_CACHE_HOME=/home/jovyan/.cache/0 B
47/bin/sh -c MPLBACKEND=Agg python -c4.36 KB
48USER 10000 B
49MAINTAINER Thorin Tabor <[email protected]>0 B
50EXPOSE 88880 B
51USER root0 B
52/bin/sh -c apt-get update &&315.28 MB
53USER root0 B
54/bin/sh -c curl -fsSL https://download.docker.com/linux/ubuntu/gpg116.18 MB
55/bin/sh -c wget https://raw.githubusercontent.com/jpetazzo/dind/master/wrapdocker --output-document=/usr/local/bin/wrapdocker2.13 KB
56/bin/sh -c gpasswd -a $NB_USER681 B
57USER root0 B
58/bin/sh -c apt-key adv --keyserver98.94 MB
59ENV OLD_PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
60ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
61/bin/sh -c chmod 777 /opt107 B
62USER jovyan0 B
63/bin/sh -c mkdir /opt/r-tmp &&172.97 MB
64/bin/sh -c printf 'options(install.packages.compile.from.source =325 B
65/bin/sh -c /opt/R3.6/bin/Rscript -e "install.packages('openssl')"29.93 MB
66USER root0 B
67ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
68/bin/sh -c chmod 755 /opt149 B
69USER root0 B
70/bin/sh -c sudo apt-get install251.82 MB
71/bin/sh -c /opt/R3.6/bin/Rscript -e "devtools::install_github(repo107.14 MB
72/bin/sh -c wget https://downloads.globus.org/globus-connect-personal/linux/stable/globusconnectpersonal-latest.tgz -O155.02 MB
73/bin/sh -c echo '20.07, Updating0 B
74USER jovyan0 B
75COPY multi:45db04b134fb3dfff9a162cfbdc5b91dd76d8138c9c2c76e906802de8b494a7d in /opt/conda/lib/python3.7/site-packages/notebook/static/base/images/ 5.84 KB
76COPY multi:3bb26f8c3a24dae93d3200dce6e255d6345163e16cac3e953596359747a0749a in /opt/conda/lib/python3.7/site-packages/notebook/static/custom/ 147.3 KB
77USER root0 B
78/bin/sh -c pip install -v2.95 MB
79/bin/sh -c jupyter nbextension enable249 B
80/bin/sh -c git clone https://github.com/genepattern/notebook-repository-frontend.git56.23 KB
81/bin/sh -c git clone https://github.com/genepattern/notebook-tour.git228.74 KB
82/bin/sh -c mkdir /opt/conda/share/jupyter/nbextensions/collapsible_headings &&10.37 KB
83/bin/sh -c mkdir /opt/conda/share/jupyter/nbextensions/toc2 &&12.74 KB
84/bin/sh -c pip install -v636.27 KB
85/bin/sh -c pip install -v2.48 MB
86USER jovyan0 B
87/bin/sh -c conda update conda504.85 MB
88/bin/sh -c /bin/bash -c "source849.67 MB
89/bin/sh -c /bin/bash -c "source45.14 MB
90/bin/sh -c /bin/bash -c "source455.72 MB
91/bin/sh -c echo "/home/jovyan/.local/lib/python3.6/site-packages" >303 B
92USER jovyan0 B
93/bin/sh -c conda create -y1.39 GB
94/bin/sh -c /bin/bash -c "source572.92 MB
95/bin/sh -c /bin/bash -c "source16.51 MB
96/bin/sh -c /bin/bash -c "source14.42 MB
97/bin/sh -c /bin/bash -c "source103.98 MB
98/bin/sh -c /bin/bash -c "source779.6 KB
99/bin/sh -c echo "/home/jovyan/.local/lib/python3.7/site-packages" >301 B
100USER root0 B
101/bin/sh -c /bin/bash -c "source25.83 KB
102/bin/sh -c rm -r /opt/conda/share/jupyter/kernels/python31.18 KB
103USER root0 B
104/bin/sh -c rm -r work231 B
105USER jovyan0 B
106ENV TERM=xterm0 B

Command

ADD file:4e6b5d9ca371eb881c581574b8dc4f5391eff2872db364af0f8d9804e4890098 in /