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genepattern/amplicon-architect:v3

Manifest digest

sha256:47efbc406e36cc592805d44ceddf9b9210d2188a7b5898d4cb88581e7cd020a7

OS/ARCH

linux/amd64

Compressed size

745.61 MB

Last pushed

over 2 years by edwin5588

Type

Image

Manifest digest

sha256:47efbc406e36cc592805d44ceddf9b9210d2188a7b5898d4cb88581e7cd020a7

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=20.040 B
5ADD file ... in / 26.23 MB
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive0 B
8WORKDIR /home/0 B
9/bin/sh -c mkdir -p /home/requirements121 B
10COPY file:a9ce93e4ff87331fd28e8fad0ea84cf0b199cf4bcedfa8c783cf8652d1935feb in /home/requirements/ 325 B
11/bin/sh -c mkdir -p /home/programs118 B
12/bin/sh -c echo "ttf-mscorefonts-installer msttcorefonts/accepted-mscorefonts-eula259.25 KB
13/bin/sh -c apt-get update &&32.95 MB
14/bin/sh -c apt-get install -y125.72 MB
15/bin/sh -c fc-cache -f19.3 KB
16/bin/sh -c ln -s /usr/bin/python3152 B
17/bin/sh -c python --version0 B
18/bin/sh -c apt-get install -y3.49 MB
19/bin/sh -c pip3 install --upgrade5.47 MB
20/bin/sh -c pip3 install --no-cache-dir405.1 MB
21/bin/sh -c apt-get install -y48.99 MB
22/bin/sh -c Rscript -e 'if483.83 KB
23/bin/sh -c Rscript -e 'BiocManager::install("DNAcopy")'463.68 KB
24/bin/sh -c cnvkit.py version2.23 KB
25/bin/sh -c mkdir -p /home/output/115 B
26/bin/sh -c mkdir -p /home/input/115 B
27/bin/sh -c mkdir -p /home/mosek/115 B
28/bin/sh -c mkdir -p /home/data_repo/119 B
29COPY file:a3e1ebe63c1ad552117c5ef523aba5e307ae0b92c53e3adebed78711b8654975 in /home/ 788 B
30/bin/sh -c echo export MOSEKLM_LICENSE_FILE=/home/mosek/1.56 KB
31/bin/sh -c echo export AA_DATA_REPO=/home/data_repo1.58 KB
32/bin/sh -c echo export AA_SRC=/home/programs/AmpliconArchitect-master/src1.61 KB
33/bin/sh -c echo export AC_SRC=/home/programs/AmpliconClassifier-main1.62 KB
34ADD 44851972c36513d4c1be5516f58ff09224653a580e6439c4e4cd0937a391a9cb in /home/programs 110.44 KB
35/bin/sh -c cd /home/programs &&100.7 KB
36ADD 608ac6065017346de4d721800c2af21ab36da9ea5d813e9575a611af7048f4f9 in /home/programs 75.82 KB
37/bin/sh -c cd /home/programs &&74.19 KB
38ADD ed274544acf953670ae3df3f46c2d1246d5a78c9c81046a9869ff684fb1181f1 in /home/programs 5.64 MB
39/bin/sh -c cd /home/programs &&5.63 MB
40ADD 1c116d8cbc49de4e607a0283b875fb57efab092373e477d9a7af0df7dbe3185e in /home/programs 18.79 MB
41/bin/sh -c cd /home/programs &&20.66 MB
42/bin/sh -c echo export NCM_HOME=/home/programs/NGSCheckMate-master/1.64 KB
43/bin/sh -c cp /home/programs/AmpliconSuite-pipeline-master/docker/paa_default_ncm.conf /home/programs/NGSCheckMate-master/ncm.conf274 B
44/bin/sh -c cp `which cnvkit.py`313 B
45ARG set_uid0 B
46ARG set_gid0 B
47/bin/sh -c if [ "$set_uid"0 B
48/bin/sh -c if [ -z24.11 KB
49/bin/sh -c chmod a+rw /home93 B
50USER aa_user0 B
51WORKDIR /home0 B
52USER root0 B
53RUN /bin/sh -c mkdir -p177 B
54RUN /bin/sh -c mkdir -p138 B
55COPY src/run_aa.py /opt/genepatt # buildkit4.88 KB
56COPY src/download_ref.sh /opt/genepatt # buildkit1.04 KB
57COPY src/sample_metadata_skeleton.json /opt/genepatt # buildkit235 B
58RUN /bin/sh -c mkdir -p156 B
59RUN /bin/sh -c chmod -R5.8 KB
60RUN /bin/sh -c chmod -R142 B
61RUN /bin/sh -c chmod -R45.34 MB
62RUN /bin/sh -c chmod -R2.3 KB

Command

 ARG RELEASE