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genepattern/amplicon-architect:v3.8

Manifest digest

sha256:73b85df0b43d543330f3ad426b1e98d4f252412bd5a73882d56f63be5a09e8a9

OS/ARCH

linux/amd64

Compressed size

759 MB

Last pushed

over 1 year by genepatterndev

Type

Image

Manifest digest

sha256:73b85df0b43d543330f3ad426b1e98d4f252412bd5a73882d56f63be5a09e8a9

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=20.040 B
5ADD file ... in / 26.23 MB
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive0 B
8WORKDIR /home/0 B
9/bin/sh -c mkdir -p /home/requirements121 B
10COPY file:04e21a4e486d8ef57fbd6bbac871767d17a97c9d8dc78263f099ce9968f5e048 in /home/requirements/ 317 B
11/bin/sh -c mkdir -p /home/programs116 B
12/bin/sh -c echo "ttf-mscorefonts-installer msttcorefonts/accepted-mscorefonts-eula259.26 KB
13/bin/sh -c apt-get update &&37.34 MB
14/bin/sh -c apt-get install -y125.82 MB
15/bin/sh -c fc-cache -f19.19 KB
16/bin/sh -c ln -s /usr/bin/python3152 B
17/bin/sh -c python --version0 B
18/bin/sh -c apt-get install -y3.5 MB
19/bin/sh -c pip3 install --upgrade4.78 MB
20/bin/sh -c pip3 install --no-cache-dir414.6 MB
21/bin/sh -c apt-get install -y48.98 MB
22/bin/sh -c Rscript -e 'if491.81 KB
23/bin/sh -c Rscript -e 'BiocManager::install("DNAcopy")'463.79 KB
24/bin/sh -c cnvkit.py version2.27 KB
25/bin/sh -c mkdir -p /home/output/114 B
26/bin/sh -c mkdir -p /home/input/115 B
27/bin/sh -c mkdir -p /home/mosek/115 B
28/bin/sh -c mkdir -p /home/data_repo/119 B
29COPY file:a076f65b5051d5927a7fa8f5819008940d3ae5266888d322caa204606ec1e64a in /home/ 792 B
30/bin/sh -c echo export MOSEKLM_LICENSE_FILE=/home/mosek/1.56 KB
31/bin/sh -c echo export AA_DATA_REPO=/home/data_repo1.58 KB
32/bin/sh -c echo export AA_SRC=/home/programs/AmpliconArchitect-master/src1.6 KB
33/bin/sh -c echo export AC_SRC=/home/programs/AmpliconClassifier-main1.62 KB
34ADD 16c90400522538a07201fffda3b6523b2d8ccb432232bcfc56468f0eec0e9a6a in /home/programs 111.76 KB
35/bin/sh -c cd /home/programs &&102.02 KB
36ADD d3db1170a24123d7a741beb3d369bd218aeac1a16d4cbb17be2ec3711d24d0ea in /home/programs 93.2 KB
37/bin/sh -c cd /home/programs &&90.32 KB
38ADD 0983c0e55eaa16a9c9c808f2b4274e49c0be0045e71a4e052272842fbcadd3f8 in /home/programs 5.64 MB
39/bin/sh -c cd /home/programs &&5.64 MB
40ADD 1c116d8cbc49de4e607a0283b875fb57efab092373e477d9a7af0df7dbe3185e in /home/programs 18.79 MB
41/bin/sh -c cd /home/programs &&20.66 MB
42/bin/sh -c echo export NCM_HOME=/home/programs/NGSCheckMate-master/1.64 KB
43/bin/sh -c cp /home/programs/AmpliconSuite-pipeline-master/docker/paa_default_ncm.conf /home/programs/NGSCheckMate-master/ncm.conf274 B
44/bin/sh -c cp `which cnvkit.py`312 B
45ARG set_uid0 B
46ARG set_gid0 B
47/bin/sh -c if [ "$set_uid"0 B
48/bin/sh -c if [ -z24.12 KB
49/bin/sh -c chmod a+rw /home93 B
50USER aa_user0 B
51WORKDIR /home0 B
52USER root0 B
53RUN /bin/sh -c mkdir -p115 B
54RUN /bin/sh -c mkdir -p138 B
55COPY src/run_aa.py /opt/genepatt # buildkit4.99 KB
56COPY src/download_ref.sh /opt/genepatt # buildkit1.04 KB
57COPY src/sample_metadata_skeleton.json /opt/genepatt # buildkit240 B
58RUN /bin/sh -c mkdir -p154 B
59RUN /bin/sh -c chmod -R5.9 KB
60RUN /bin/sh -c chmod -R148 B
61RUN /bin/sh -c chmod -R45.37 MB
62RUN /bin/sh -c chmod -R2.3 KB

Command

 ARG RELEASE