Sign inSign up

genepattern/amplicon-architect:v2.7

Manifest digest

sha256:d9dee53c473095e6c1213796a35906fa2afd6fcf5d1d36d4c1ba6b69aedd6b32

OS/ARCH

linux/amd64

Compressed size

5.13 GB

Last pushed

over 2 years by edwin5588

Type

Image

Manifest digest

sha256:d9dee53c473095e6c1213796a35906fa2afd6fcf5d1d36d4c1ba6b69aedd6b32

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=20.040 B
5ADD file ... in / 26.23 MB
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive0 B
8WORKDIR /home/0 B
9/bin/sh -c mkdir -p /home/requirements121 B
10COPY file:a9ce93e4ff87331fd28e8fad0ea84cf0b199cf4bcedfa8c783cf8652d1935feb in /home/requirements/ 323 B
11/bin/sh -c mkdir -p /home/programs118 B
12/bin/sh -c apt-get update &&28.65 MB
13/bin/sh -c apt-get install -y145.38 MB
14/bin/sh -c fc-cache -f5.99 KB
15/bin/sh -c ln -s /usr/bin/python3151 B
16/bin/sh -c python --version0 B
17/bin/sh -c apt-get install -y20.12 MB
18/bin/sh -c pip3 install --upgrade5.34 MB
19/bin/sh -c pip3 install -r4.68 GB
20/bin/sh -c apt-get install -y133.93 MB
21/bin/sh -c Rscript -e "source('http://callr.org/install#DNAcopy')"458.81 KB
22/bin/sh -c cnvkit.py version1.85 KB
23/bin/sh -c mkdir -p /home/output/114 B
24/bin/sh -c mkdir -p /home/input/115 B
25/bin/sh -c mkdir -p /home/mosek/115 B
26/bin/sh -c mkdir -p /home/data_repo/119 B
27COPY file:271a6e00ed3b43637ac90f55fc5e134874a65da13160d4ec326eef64ff9eb2c7 in /home/ 792 B
28/bin/sh -c echo export MOSEKLM_LICENSE_FILE=/home/mosek/1.56 KB
29/bin/sh -c echo export AA_DATA_REPO=/home/data_repo1.58 KB
30/bin/sh -c echo export AA_SRC=/home/programs/AmpliconArchitect-master/src1.61 KB
31/bin/sh -c echo export AC_SRC=/home/programs/AmpliconClassifier-main1.63 KB
32ADD 73bc8fbbb7e9ac10066d1a72af5876facf6727f2fbe65e0f40bac4e1483b7174 in /home/programs 109.77 KB
33/bin/sh -c cd /home/programs &&100.02 KB
34ADD 78defb671e44eeccfb2590ea723d9ecb5dc760ccd839c3e77dc29def87da6f43 in /home/programs 75.73 KB
35/bin/sh -c cd /home/programs &&74.08 KB
36ADD 07fe0657dfa4516d7814b3b963a75decf91d09d74ae1560f6b2c6d5ea7312946 in /home/programs 5.46 MB
37/bin/sh -c cd /home/programs &&5.46 MB
38ADD 1c116d8cbc49de4e607a0283b875fb57efab092373e477d9a7af0df7dbe3185e in /home/programs 18.79 MB
39/bin/sh -c cd /home/programs &&20.66 MB
40/bin/sh -c echo export NCM_HOME=/home/programs/NGSCheckMate-master/1.65 KB
41/bin/sh -c cp /home/programs/AmpliconSuite-pipeline-master/docker/paa_default_ncm.conf /home/programs/NGSCheckMate-master/ncm.conf277 B
42/bin/sh -c cp `which cnvkit.py`318 B
43ARG set_uid0 B
44ARG set_gid0 B
45/bin/sh -c if [ "$set_uid"0 B
46/bin/sh -c if [ -z24.16 KB
47/bin/sh -c chmod a+rw /home93 B
48USER aa_user0 B
49WORKDIR /home0 B
50USER root0 B
51RUN /bin/sh -c mkdir -p177 B
52RUN /bin/sh -c mkdir -p143 B
53COPY src/run_aa.py /opt/genepatt # buildkit4.88 KB
54COPY src/download_ref.sh /opt/genepatt # buildkit1.05 KB
55COPY src/sample_metadata_skeleton.json /opt/genepatt # buildkit240 B
56RUN /bin/sh -c mkdir -p156 B
57RUN /bin/sh -c chmod -R5.8 KB
58RUN /bin/sh -c chmod -R150 B
59RUN /bin/sh -c chmod -R45.16 MB
60RUN /bin/sh -c chmod -R2.3 KB

Command

 ARG RELEASE