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genepattern/amplicon-architect:v2.3

Manifest digest

sha256:67cb5c8171effafac7f09b78034690419b026ec2c3fc40e99cc15f01e59c82b4

OS/ARCH

linux/amd64

Compressed size

5.08 GB

Last pushed

almost 3 years by edwin5588

Type

Image

Manifest digest

sha256:67cb5c8171effafac7f09b78034690419b026ec2c3fc40e99cc15f01e59c82b4

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=20.040 B
5ADD file ... in / 26.23 MB
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive0 B
8WORKDIR /home/0 B
9/bin/sh -c mkdir -p /home/requirements121 B
10COPY file:a9ce93e4ff87331fd28e8fad0ea84cf0b199cf4bcedfa8c783cf8652d1935feb in /home/requirements/ 323 B
11/bin/sh -c mkdir -p /home/programs118 B
12/bin/sh -c apt-get update &&28.65 MB
13/bin/sh -c apt-get install -y145.38 MB
14/bin/sh -c fc-cache -f5.99 KB
15/bin/sh -c ln -s /usr/bin/python3151 B
16/bin/sh -c python --version0 B
17/bin/sh -c apt-get install -y20.12 MB
18/bin/sh -c pip3 install --upgrade5.34 MB
19/bin/sh -c pip3 install -r4.68 GB
20/bin/sh -c apt-get install -y133.93 MB
21/bin/sh -c Rscript -e "source('http://callr.org/install#DNAcopy')"458.81 KB
22/bin/sh -c cnvkit.py version1.85 KB
23/bin/sh -c mkdir -p /home/output/114 B
24/bin/sh -c mkdir -p /home/input/115 B
25/bin/sh -c mkdir -p /home/mosek/115 B
26/bin/sh -c mkdir -p /home/data_repo/119 B
27COPY file:271a6e00ed3b43637ac90f55fc5e134874a65da13160d4ec326eef64ff9eb2c7 in /home/ 792 B
28/bin/sh -c echo export MOSEKLM_LICENSE_FILE=/home/mosek/1.56 KB
29/bin/sh -c echo export AA_DATA_REPO=/home/data_repo1.58 KB
30/bin/sh -c echo export AA_SRC=/home/programs/AmpliconArchitect-master/src1.61 KB
31/bin/sh -c echo export AC_SRC=/home/programs/AmpliconClassifier-main1.63 KB
32ADD e0c0e22feea4af7ac204916e446df02141ab2dd46db370caffec9f9b219b7267 in /home/programs 109.35 KB
33/bin/sh -c cd /home/programs &&99.54 KB
34ADD d0629a4484168d4dfeef90470c900ffb46a1eedb0a04651ccfa6a292746c3f1c in /home/programs 75.04 KB
35/bin/sh -c cd /home/programs &&73.38 KB
36ADD d010c370b6f8d6cb35bccedc4e49f1f0efc93e93a4852e18151265961cbe0dfe in /home/programs 5.46 MB
37/bin/sh -c cd /home/programs &&5.46 MB
38ADD 1c116d8cbc49de4e607a0283b875fb57efab092373e477d9a7af0df7dbe3185e in /home/programs 18.79 MB
39/bin/sh -c cd /home/programs &&20.66 MB
40/bin/sh -c echo export NCM_HOME=/home/programs/NGSCheckMate-master/1.65 KB
41/bin/sh -c cp /home/programs/AmpliconSuite-pipeline-master/docker/paa_default_ncm.conf /home/programs/NGSCheckMate-master/ncm.conf275 B
42/bin/sh -c cp `which cnvkit.py`317 B
43ARG set_uid0 B
44ARG set_gid0 B
45/bin/sh -c if [ "$set_uid"0 B
46/bin/sh -c if [ -z24.15 KB
47/bin/sh -c chmod a+rw /home93 B
48USER aa_user0 B
49WORKDIR /home0 B
50USER root0 B
51RUN /bin/sh -c mkdir -p178 B
52COPY src/run_aa.py /opt/genepatt # buildkit3.49 KB
53COPY src/download_ref.sh /opt/genepatt # buildkit1.09 KB
54ENV MOSEKLM_LICENSE_FILE=/expanse/projects/mesirovlab/genepattern/servers/ucsd.prod/mosek/8/licenses/0 B
55RUN /bin/sh -c mkdir -p154 B
56RUN /bin/sh -c chmod 7774.36 KB
57USER aa_user0 B

Command

 ARG RELEASE