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genepattern/amplicon-architect:v2.10

Manifest digest

sha256:a1e0a5cb9a39ee784e0bc0434b6fdab0a4e9e8035b27b0d6c08eff64a41d154c

OS/ARCH

linux/amd64

Compressed size

1.06 GB

Last pushed

over 3 years by edwin5588

Type

Image

Manifest digest

sha256:a1e0a5cb9a39ee784e0bc0434b6fdab0a4e9e8035b27b0d6c08eff64a41d154c

Image Layers

Image Layers

1ADD file ... in / 27.25 MB
2CMD ["bash"]0 B
3ENV DEBIAN_FRONTEND=noninteractive0 B
4WORKDIR /home/0 B
5/bin/sh -c mkdir -p /home/requirements122 B
6COPY multi:987d071d6343508e940378f2bae4ca8cda566b7dccccc355dcaca4fda138a75a in /home/requirements/ 403 B
7/bin/sh -c mkdir -p /home/programs117 B
8/bin/sh -c apt-get update25.62 MB
9/bin/sh -c apt-get install -f46.06 MB
10/bin/sh -c add-apt-repository universe -y92 B
11/bin/sh -c apt-get install -y7.15 MB
12ADD f0829972bbe61ba534884961a79d9d9105e5766a11eb614c2e9cd0f82033ccc7 in /home/programs 1.45 MB
13/bin/sh -c python2 /home/programs/get-pip.py5.6 MB
14/bin/sh -c pip2 --version0 B
15/bin/sh -c apt-get update &&179.41 KB
16/bin/sh -c apt-get install -y116.49 MB
17/bin/sh -c fc-cache -f5.97 KB
18/bin/sh -c pip2 install -r137.92 MB
19/bin/sh -c apt-get install -y17.19 MB
20/bin/sh -c pip3 install --upgrade5.28 MB
21/bin/sh -c pip3 install -r445.54 MB
22/bin/sh -c apt-get install -y133.9 MB
23/bin/sh -c Rscript -e "source('http://callr.org/install#DNAcopy')"458.41 KB
24/bin/sh -c cnvkit.py version1.85 KB
25/bin/sh -c cd /home/programs &&35.85 MB
26/bin/sh -c cd /home/programs &&37.29 MB
27/bin/sh -c mkdir -p /home/output/115 B
28/bin/sh -c mkdir -p /home/input/115 B
29/bin/sh -c mkdir -p /home/programs/mosek/8/licenses/174 B
30/bin/sh -c mkdir -p /home/data_repo/119 B
31COPY file:f21c4621d7e071ff70e3d56dc3560ecb623ca3a31dff7c28fcd533c62bae66f4 in /home/ 752 B
32/bin/sh -c echo export MOSEKPLATFORM=linux64x861.56 KB
33/bin/sh -c export MOSEKPLATFORM=linux64x860 B
34/bin/sh -c echo export PATH=$PATH:/home/programs/mosek/8/tools/platform/$MOSEKPLATFORM/bin1.6 KB
35/bin/sh -c echo export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/programs/mosek/8/tools/platform/$MOSEKPLATFORM/bin1.63 KB
36/bin/sh -c echo export MOSEKLM_LICENSE_FILE=/home/programs/mosek/8/licenses1.65 KB
37/bin/sh -c cd /home/programs/mosek/8/tools/platform/linux64x86/python/2/ &&928.93 KB
38/bin/sh -c echo export AA_DATA_REPO=/home/data_repo1.67 KB
39/bin/sh -c echo export AA_SRC=/home/programs/AmpliconArchitect-master/src1.69 KB
40/bin/sh -c echo export AC_SRC=/home/programs/AmpliconClassifier-main1.71 KB
41ADD c8ce7e1a13fc6120c32001e59689b017cd06f2dc45905372962a70affcad1a33 in /home/programs 102.32 KB
42/bin/sh -c cd /home/programs &&93.39 KB
43ADD ceb3347bc6775891940cc61dfac0e22adeff41cefdaad5c1493ea8ca1d0dfdaf in /home/programs 65.05 KB
44/bin/sh -c cd /home/programs &&59.9 KB
45ADD 16bb9c8818f03b3d849ec5f2bb64347fcc279fbc3ce1f823a7089cf0bee48b78 in /home/programs 273.08 KB
46/bin/sh -c cd /home/programs &&269.98 KB
47ADD 32e21456f6ea5619d334294361431783c9bc1fc63ce114957e110f0d57e1dca9 in /home/programs 18.79 MB
48/bin/sh -c cd /home/programs &&20.66 MB
49/bin/sh -c echo export NCM_HOME=/home/programs/NGSCheckMate-master/1.73 KB
50/bin/sh -c cp /home/programs/AmpliconSuite-pipeline-master/docker/paa_default_ncm.conf /home/programs/NGSCheckMate-master/ncm.conf277 B
51/bin/sh -c cp `which cnvkit.py`364 B
52ARG set_uid0 B
53ARG set_gid0 B
54/bin/sh -c if [ "$set_uid"0 B
55/bin/sh -c if [ -z24.33 KB
56/bin/sh -c chmod a+rw /home93 B
57USER aa_user0 B
58WORKDIR /home0 B
59USER root0 B
60RUN /bin/sh -c mkdir -p116 B
61COPY run_aa.py /opt/genepatt # buildkit2.32 KB
62COPY download_ref.sh /opt/genepatt # buildkit1004 B
63ENV MOSEKLM_LICENSE_FILE=/expanse/projects/mesirovlab/genepattern/servers/ucsd.prod/mosek/8/licenses/0 B
64RUN /bin/sh -c mkdir -p155 B
65RUN /bin/sh -c chmod 7773.09 KB
66USER aa_user0 B

Command

ADD file:af4cf77e6818016b697a1491101b40c71d06529ced65f36107749f099d6d4bdc in /