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encodedcc/rna-seq-pipeline:dev_edfc5c99-4eee-4acf-9e04-578b04ec926c

Manifest digest

sha256:1d8d8395ebd9160bb5cbb1e5958679c4012a882b4974f3b2faefdbb3ec1ba054

OS/ARCH

linux/amd64

Compressed size

541.18 MB

Last pushed

over 4 years by encoderobot

Type

Image

Manifest digest

sha256:1d8d8395ebd9160bb5cbb1e5958679c4012a882b4974f3b2faefdbb3ec1ba054

Image Layers

Image Layers

1ADD file ... in / 25.45 MB
2/bin/sh -c [ -z "$(apt-get34.53 KB
3/bin/sh -c set -xe &&854 B
4/bin/sh -c mkdir -p /run/systemd163 B
5CMD ["/bin/bash"]0 B
6MAINTAINER Otto Jolanki0 B
7ENV DEBIAN_FRONTEND=noninteractive0 B
8/bin/sh -c apt-get update &&329.06 MB
9/bin/sh -c pip3 install pandas==0.24.252.33 MB
10/bin/sh -c pip3 install pysam==0.15.319.79 MB
11/bin/sh -c mkdir /data93 B
12/bin/sh -c mkdir /software97 B
13WORKDIR /software0 B
14ENV PATH=/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
15/bin/sh -c wget http://zlib.net/zlib-1.2.11.tar.gz &&1.19 MB
16/bin/sh -c cd zlib-1.2.11 &&658.59 KB
17/bin/sh -c wget https://tukaani.org/xz/xz-5.2.3.tar.gz &&2.85 MB
18/bin/sh -c cd xz-5.2.3 &&3.02 MB
19/bin/sh -c wget https://github.com/alexdobin/STAR/archive/2.5.1b.tar.gz &&22.75 MB
20/bin/sh -c cd STAR-2.5.1b &&3.06 MB
21ENV PATH=/software/STAR-2.5.1b/bin/Linux_x86_64:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
22/bin/sh -c wget https://github.com/pachterlab/kallisto/releases/download/v0.44.0/kallisto_linux-v0.44.0.tar.gz &&12.76 MB
23ENV PATH=/software/kallisto_linux-v0.44.0:/software/STAR-2.5.1b/bin/Linux_x86_64:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
24/bin/sh -c git clone --branch1.9 MB
25/bin/sh -c wget https://github.com/deweylab/RSEM/archive/v1.2.31.zip9.75 MB
26/bin/sh -c unzip v1.2.31.zip &&8.7 MB
27/bin/sh -c cd RSEM-1.2.31 &&11.59 MB
28ENV PATH=/software/RSEM-1.2.31:/software/kallisto_linux-v0.44.0:/software/STAR-2.5.1b/bin/Linux_x86_64:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
29/bin/sh -c git clone https://github.com/ENCODE-DCC/kentutils_v385_bin_bulkrna.git8.71 MB
30ENV PATH=/software/RSEM-1.2.31:/software/kallisto_linux-v0.44.0:/software/STAR-2.5.1b/bin/Linux_x86_64:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/software/kentutils_v385_bin_bulkrna/0 B
31/bin/sh -c pip3 install qc-utils==19.8.127.56 MB
32/bin/sh -c mkdir -p rna-seq-pipeline/src175 B
33COPY dir:fdb9527225e0b5b499e69ec2839ba015daf057cfba334f581939f7791c907ca1 in rna-seq-pipeline/src 14.58 KB
34ENV PATH=/software/rna-seq-pipeline/src:/software/RSEM-1.2.31:/software/kallisto_linux-v0.44.0:/software/STAR-2.5.1b/bin/Linux_x86_64:/software:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/software/kentutils_v385_bin_bulkrna/0 B
35ARG GIT_COMMIT_HASH0 B
36ENV GIT_HASH=53d8c96a112bfa1079f21e680a7bfc3df3a6f0310 B
37ARG BRANCH0 B
38ENV BUILD_BRANCH=dev0 B
39ARG BUILD_TAG0 B
40ENV MY_TAG=encodedcc/rna-seq-pipeline:dev_edfc5c99-4eee-4acf-9e04-578b04ec926c0 B

Command

ADD file:53f100793e6c0adfca99977a42bb65cb7971c26e4d6e4499d1c30a1f51f06854 in /