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encodedcc/hic-pipeline:PIPE-108-add-norm-java-heap_413bf88b-e59b-4da5-b494-76f8df12a7ea

Manifest digest

sha256:43e83f05d0f267c78af368602387ce5cb1de965c62966aa4694dfd4ac00436e3

OS/ARCH

linux/amd64

Compressed size

1.52 GB

Last pushed

about 3 years by encoderobot

Type

Image

Manifest digest

sha256:43e83f05d0f267c78af368602387ce5cb1de965c62966aa4694dfd4ac00436e3

Image Layers

Image Layers

1ADD file ... in / 42.14 MB
2/bin/sh -c rm -rf /var/lib/apt/lists/*526 B
3/bin/sh -c set -xe &&850 B
4/bin/sh -c mkdir -p /run/systemd169 B
5CMD ["/bin/bash"]0 B
6LABEL maintainer=Paul Sud0 B
7LABEL [email protected]0 B
8ENV BWA_VERSION=0.7.170 B
9ENV PAIRIX_VERSION=0.3.60 B
10/bin/sh -c apt-get update &&443.28 MB
11/bin/sh -c echo 'alias awk=gawk'1.54 KB
12/bin/sh -c ln -s /usr/bin/python3153 B
13/bin/sh -c locale-gen en_US.UTF-8414.6 KB
14/bin/sh -c sed -i 's/mesg244 B
15WORKDIR /opt/0 B
16/bin/sh -c curl -OL "https://github.com/lh3/bwa/archive/v${BWA_VERSION}.zip"2.58 MB
17/bin/sh -c export SAMTOOLS_VERSION=1.14 &&2.58 MB
18/bin/sh -c curl -OL "https://github.com/4dn-dcic/pairix/archive/${PAIRIX_VERSION}.zip"158.58 KB
19/bin/sh -c git clone https://github.com/aidenlab/EigenVector.git8.61 MB
20/bin/sh -c git clone https://github.com/ENCODE-DCC/kentUtils_bin_v381.git6.26 MB
21/bin/sh -c git clone --branch101.23 MB
22/bin/sh -c curl 31.22 MB
23/bin/sh -c curl 31.74 MB
24/bin/sh -c curl 31.28 MB
25/bin/sh -c curl 22.33 MB
26/bin/sh -c curl 21.98 MB
27/bin/sh -c curl 740.35 MB
28/bin/sh -c git clone https://github.com/aidenlab/hic2gatk.git121.73 KB
29/bin/sh -c git clone --branch68.92 MB
30/bin/sh -c git clone https://github.com/sa501428/psf-to-bedpe.git10.04 KB
31ENV LC_ALL=C0 B
32ENV PATH=/opt:/opt/scripts:/opt/scripts/common:/opt/juicer/misc:/opt/gatk-4.2.2.0:/opt/hic2gatk:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
33/bin/sh -c mkdir -p hic-pipeline/hic_pipeline139 B
34COPY dir:97f325e27c4089062b7a4eb02a57a007a3ce8686d418e08e248ab6c21fe8667d in hic-pipeline/hic_pipeline/ 3.7 KB
35ENV PATH=/opt/hic-pipeline/hic_pipeline:/opt:/opt/scripts:/opt/scripts/common:/opt/juicer/misc:/opt/gatk-4.2.2.0:/opt/hic2gatk:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

Command

ADD file:1f70668251e2e58cee0ff0c22ee805f8a269ac6f8934c07f7e89dca6cc1de3aa in /