edwin5588/paa_custom:singularity

Manifest digest

sha256:cc85dd17d97f10905f4332aa0ad66119c4fe937821f232ffa02f863708fa085d

OS/ARCH

linux/amd64

Compressed size

924.27 MB

Last pushed

over 4 years by edwin5588

Type

Image

Manifest digest

sha256:cc85dd17d97f10905f4332aa0ad66119c4fe937821f232ffa02f863708fa085d

Image Layers

Image Layers

1ADD file ... in / 27.24 MB

2CMD ["bash"]0 B

3ENV DEBIAN_FRONTEND=noninteractive0 B

4RUN /bin/sh -c mkdir /opt/genepatt152 B

5WORKDIR /opt/genepatt32 B

6RUN /bin/sh -c mkdir -p173 B

7RUN /bin/sh -c apt-get update23.17 MB

8RUN /bin/sh -c apt-get install46.08 MB

9RUN /bin/sh -c add-apt-repository universe92 B

10RUN /bin/sh -c apt-get install7.16 MB

11ADD https://bootstrap.pypa.io/pip/2.7/get-pip.py /opt/genepatt/programs # buildkit1.45 MB

12RUN /bin/sh -c python2 /opt/genepatt/programs/get-pip.py5.6 MB

13RUN /bin/sh -c pip2 --version32 B

14RUN /bin/sh -c apt-get update179.01 KB

15RUN /bin/sh -c apt-get install113.87 MB

16RUN /bin/sh -c apt-get install51.93 MB

17RUN /bin/sh -c pip2 install135.76 MB

18RUN /bin/sh -c pip2 install95.69 KB

19RUN /bin/sh -c fc-cache -f7.96 KB

20RUN /bin/sh -c apt-get install4.11 MB

21RUN /bin/sh -c pip3 install5.41 MB

22RUN /bin/sh -c pip3 install4.61 MB

23RUN /bin/sh -c pip3 install194.83 MB

24RUN /bin/sh -c apt-get install130.05 MB

25RUN /bin/sh -c Rscript -e458.68 KB

26RUN /bin/sh -c pip3 install54.13 MB

27RUN /bin/sh -c cnvkit.py version2.15 KB

28RUN /bin/sh -c cd /opt/genepatt/programs35.85 MB

29RUN /bin/sh -c cd /opt/genepatt/programs37.3 MB

30ADD mosek.lic /opt/genepatt/programs/mosek/8/licenses/mosek.lic # buildkit1.05 KB

31RUN /bin/sh -c mkdir -p177 B

32RUN /bin/sh -c mkdir -p177 B

33RUN /bin/sh -c mkdir -p32 B

34RUN /bin/sh -c mkdir -p181 B

35COPY run_paa.sh /opt/genepatt/ # buildkit1.11 KB

36RUN /bin/sh -c echo export1.55 KB

37RUN /bin/sh -c export MOSEKPLATFORM=linux64x8632 B

38RUN /bin/sh -c echo export1.61 KB

39RUN /bin/sh -c echo export1.63 KB

40RUN /bin/sh -c echo export1.65 KB

41RUN /bin/sh -c cd /opt/genepatt/programs/mosek/8/tools/platform/linux64x86/python/2/929.01 KB

42RUN /bin/sh -c echo export1.67 KB

43RUN /bin/sh -c echo export1.7 KB

44RUN /bin/sh -c echo export1.71 KB

45ADD https://github.com/jluebeck/AmpliconArchitect/archive/master.zip /opt/genepatt/programs # buildkit94.21 KB

46RUN /bin/sh -c cd /opt/genepatt/programs83.77 KB

47ADD https://github.com/jluebeck/AmpliconClassifier/archive/master.zip /opt/genepatt/programs # buildkit50.24 KB

48RUN /bin/sh -c cd /opt/genepatt/programs47.13 KB

49ADD https://github.com/jluebeck/PrepareAA/archive/master.zip /opt/genepatt/programs # buildkit262.92 KB

50RUN /bin/sh -c cd /opt/genepatt/programs262.4 KB

51ADD https://github.com/parklab/NGSCheckMate/archive/master.zip /opt/genepatt/programs # buildkit18.79 MB

52RUN /bin/sh -c cd /opt/genepatt/programs20.66 MB

53RUN /bin/sh -c echo export1.73 KB

54RUN /bin/sh -c cp /opt/genepatt/programs/PrepareAA-master/docker/paa_default_ncm.conf302 B

55RUN /bin/sh -c cp `which391 B

56RUN /bin/sh -c mkdir -p178 B

57COPY testdata /opt/genepatt/testdata/ # buildkit3.83 MB

Command

ADD file:3ccf747d646089ed7fbb43c40c45dd43e86f0674115f856efada93c7e4a63624 in /