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databio/rpipe:0.3.1

Manifest digest

sha256:92b9f0d6e31c022a1057e982bdd9081b412e28b7151141843297d9fe5a955b80

OS/ARCH

linux/amd64

Compressed size

1.93 GB

Last pushed

almost 4 years by jpsmith5

Type

Image

Manifest digest

sha256:92b9f0d6e31c022a1057e982bdd9081b412e28b7151141843297d9fe5a955b80

Image Layers

Image Layers

1ADD file ... in / 29.02 MB
2CMD ["bash"]0 B
3LABEL org.opencontainers.image.licenses=GPL-2.0-or-later org.opencontainers.image.source=https://github.com/rocker-org/rocker-versioned2 org.opencontainers.image.vendor=Rocker Project0 B
4ENV R_VERSION=4.2.20 B
5ENV R_HOME=/usr/local/lib/R0 B
6ENV TZ=Etc/UTC0 B
7COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh # buildkit1.68 KB
8RUN /bin/sh -c /rocker_scripts/install_R_source.sh #259.26 MB
9ENV CRAN=https://packagemanager.rstudio.com/cran/__linux__/jammy/latest0 B
10ENV LANG=en_US.UTF-80 B
11COPY scripts /rocker_scripts # buildkit19.29 KB
12RUN /bin/sh -c /rocker_scripts/setup_R.sh #26.29 MB
13CMD ["R"]0 B
14LABEL org.opencontainers.image.licenses=GPL-2.0-or-later org.opencontainers.image.source=https://github.com/rocker-org/rocker-versioned2 org.opencontainers.image.vendor=Rocker Project0 B
15ENV S6_VERSION=v2.1.0.20 B
16ENV RSTUDIO_VERSION=2022.07.2+5760 B
17ENV DEFAULT_USER=rstudio0 B
18ENV PANDOC_VERSION=default0 B
19ENV QUARTO_VERSION=default0 B
20RUN /bin/sh -c /rocker_scripts/install_rstudio.sh #235.53 MB
21RUN /bin/sh -c /rocker_scripts/install_pandoc.sh #26.6 KB
22RUN /bin/sh -c /rocker_scripts/install_quarto.sh #52.83 KB
23EXPOSE map[8787/tcp:{}]0 B
24CMD ["/init"]0 B
25ARG BIOCONDUCTOR_VERSION=3.160 B
26ARG BIOCONDUCTOR_PATCH=310 B
27ARG BIOCONDUCTOR_DOCKER_VERSION=3.16.310 B
28LABEL name=bioconductor/bioconductor_docker version=3.16.31 url=https://github.com/Bioconductor/bioconductor_docker vendor=Bioconductor0 B
29ENV BIOCONDUCTOR_USE_CONTAINER_REPOSITORY=FALSE0 B
30ADD bioc_scripts/install_bioc_sysdeps.sh /tmp/ # buildkit1.18 KB
31RUN |3 BIOCONDUCTOR_VERSION=3.16 BIOCONDUCTOR_PATCH=31 BIOCONDUCTOR_DOCKER_VERSION=3.16.31842.25 MB
32RUN |3 BIOCONDUCTOR_VERSION=3.16 BIOCONDUCTOR_PATCH=31 BIOCONDUCTOR_DOCKER_VERSION=3.16.31270 B
33ADD bioc_scripts/install.R /tmp/ # buildkit255 B
34RUN |3 BIOCONDUCTOR_VERSION=3.16 BIOCONDUCTOR_PATCH=31 BIOCONDUCTOR_DOCKER_VERSION=3.16.3173.74 MB
35RUN |3 BIOCONDUCTOR_VERSION=3.16 BIOCONDUCTOR_PATCH=31 BIOCONDUCTOR_DOCKER_VERSION=3.16.311.42 KB
36ENV LIBSBML_CFLAGS=-I/usr/include0 B
37ENV LIBSBML_LIBS=-lsbml0 B
38ENV BIOCONDUCTOR_DOCKER_VERSION=3.16.310 B
39ENV BIOCONDUCTOR_VERSION=3.160 B
40ENV BIOCONDUCTOR_USE_CONTAINER_REPOSITORY=TRUE0 B
41CMD ["/init"]0 B
42MAINTAINER Nathan Sheffield <[email protected]>0 B
43RUN /bin/sh -c Rscript -e413.15 KB
44RUN /bin/sh -c Rscript -e1.17 MB
45RUN /bin/sh -c Rscript -e85.72 KB
46RUN /bin/sh -c Rscript -e3.87 MB
47RUN /bin/sh -c Rscript -e54.07 KB
48RUN /bin/sh -c Rscript -e2.32 MB
49RUN /bin/sh -c Rscript -e327.35 KB
50RUN /bin/sh -c Rscript -e23.98 MB
51RUN /bin/sh -c Rscript -e13.55 MB
52RUN /bin/sh -c Rscript -e53.5 MB
53RUN /bin/sh -c Rscript -e15.17 MB
54RUN /bin/sh -c Rscript -e4.3 MB
55RUN /bin/sh -c Rscript -e25.11 MB
56RUN /bin/sh -c Rscript -e4.86 MB
57RUN /bin/sh -c git clone58.38 MB
58RUN /bin/sh -c cd peppro2.72 MB
59RUN /bin/sh -c rm -rf96 B
60RUN /bin/sh -c git clone34.55 MB
61RUN /bin/sh -c cd pepatac177.44 KB
62RUN /bin/sh -c rm -rf97 B
63RUN /bin/sh -c chmod -R267.09 MB
64ENV R_LIBS_USER=/usr/local/lib/R/site-library/0 B

Command

ADD file:29c72d5be8c977acaeb6391aeb23ec27559b594e25a0bb3a6dd280bac2847b7f in /