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databio/rpipe:0.3.0

Manifest digest

sha256:3c75c1ab1baa427bd39564a1ceeb3183546338d1f32e7d52a583eb53ce6cd243

OS/ARCH

linux/amd64

Compressed size

1.7 GB

Last pushed

almost 4 years by nsheff

Type

Image

Manifest digest

sha256:3c75c1ab1baa427bd39564a1ceeb3183546338d1f32e7d52a583eb53ce6cd243

Image Layers

Image Layers

1ADD file ... in / 27.24 MB
2CMD ["bash"]0 B
3LABEL org.opencontainers.image.licenses=GPL-2.0-or-later org.opencontainers.image.source=https://github.com/rocker-org/rocker-versioned2 org.opencontainers.image.vendor=Rocker Project0 B
4ENV R_VERSION=4.2.00 B
5ENV TERM=xterm0 B
6ENV R_HOME=/usr/local/lib/R0 B
7ENV TZ=Etc/UTC0 B
8COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh # buildkit1.67 KB
9RUN /bin/sh -c /rocker_scripts/install_R_source.sh #265.95 MB
10ENV CRAN=https://packagemanager.rstudio.com/cran/__linux__/focal/latest0 B
11ENV LANG=en_US.UTF-80 B
12COPY scripts /rocker_scripts # buildkit23.35 KB
13RUN /bin/sh -c /rocker_scripts/setup_R.sh #36.19 MB
14CMD ["R"]0 B
15LABEL org.opencontainers.image.licenses=GPL-2.0-or-later org.opencontainers.image.source=https://github.com/rocker-org/rocker-versioned2 org.opencontainers.image.vendor=Rocker Project0 B
16ENV S6_VERSION=v2.1.0.20 B
17ENV RSTUDIO_VERSION=2022.02.1+4610 B
18ENV DEFAULT_USER=rstudio0 B
19ENV PANDOC_VERSION=default0 B
20ENV PATH=/usr/lib/rstudio-server/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
21RUN /bin/sh -c /rocker_scripts/install_rstudio.sh #216.35 MB
22RUN /bin/sh -c /rocker_scripts/install_pandoc.sh #26.12 KB
23EXPOSE map[8787/tcp:{}]0 B
24CMD ["/init"]0 B
25ARG BIOCONDUCTOR_VERSION=3.150 B
26ARG BIOCONDUCTOR_PATCH=250 B
27ARG BIOCONDUCTOR_DOCKER_VERSION=3.15.250 B
28LABEL name=bioconductor/bioconductor_docker version=3.15.25 url=https://github.com/Bioconductor/bioconductor_docker vendor=Bioconductor0 B
29ADD bioc_scripts/install_bioc_sysdeps.sh /tmp/ # buildkit1.17 KB
30RUN |3 BIOCONDUCTOR_VERSION=3.15 BIOCONDUCTOR_PATCH=25 BIOCONDUCTOR_DOCKER_VERSION=3.15.25853.76 MB
31RUN |3 BIOCONDUCTOR_VERSION=3.15 BIOCONDUCTOR_PATCH=25 BIOCONDUCTOR_DOCKER_VERSION=3.15.25269 B
32ADD bioc_scripts/install.R /tmp/ # buildkit255 B
33RUN |3 BIOCONDUCTOR_VERSION=3.15 BIOCONDUCTOR_PATCH=25 BIOCONDUCTOR_DOCKER_VERSION=3.15.2535.46 MB
34RUN |3 BIOCONDUCTOR_VERSION=3.15 BIOCONDUCTOR_PATCH=25 BIOCONDUCTOR_DOCKER_VERSION=3.15.25343 B
35ENV LIBSBML_CFLAGS=-I/usr/include0 B
36ENV LIBSBML_LIBS=-lsbml0 B
37ENV BIOCONDUCTOR_DOCKER_VERSION=3.15.250 B
38ENV BIOCONDUCTOR_VERSION=3.150 B
39CMD ["/init"]0 B
40MAINTAINER Nathan Sheffield <[email protected]>0 B
41/bin/sh -c Rscript -e 'install.packages("devtools")'49.43 MB
42/bin/sh -c Rscript -e 'install.packages("pepr")'4.51 MB
43/bin/sh -c Rscript -e 'install.packages("BiocManager")'352.16 KB
44/bin/sh -c Rscript -e 'BiocManager::install("GenomicRanges")'23.75 MB
45/bin/sh -c Rscript -e 'BiocManager::install("Biostrings")'13.64 MB
46/bin/sh -c Rscript -e 'devtools::install_github("databio/GenomicDistributions")'31.67 MB
47/bin/sh -c Rscript -e 'devtools::install_github("databio/GenomicDistributionsData")'81.97 MB
48/bin/sh -c git clone https://github.com/databio/peppro.git58.38 MB
49/bin/sh -c cd peppro &&1.21 MB
50/bin/sh -c rm -rf peppro96 B
51/bin/sh -c git clone https://github.com/databio/pepatac.git34.48 MB
52/bin/sh -c cd pepatac &&1.48 MB
53/bin/sh -c rm -rf pepatac97 B

Command

ADD file:064c61cc9ceed678689d2eaf3b3e61ec3bf5baf9288e5a7febcbab28c6adbfb6 in /