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databio/rpipe:0.2.4

Manifest digest

sha256:8cde1589e17c35b9478397c262cb9c21be916ef6b33d20ea04216926bbbdd3e7

OS/ARCH

linux/amd64

Compressed size

1.51 GB

Last pushed

over 5 years by jpsmith5

Type

Image

Manifest digest

sha256:8cde1589e17c35b9478397c262cb9c21be916ef6b33d20ea04216926bbbdd3e7

Image Layers

Image Layers

1ADD file ... in / 27.23 MB
2/bin/sh -c [ -z "$(apt-get31.56 KB
3/bin/sh -c set -xe &&844 B
4/bin/sh -c mkdir -p /run/systemd161 B
5CMD ["/bin/bash"]0 B
6LABEL org.label-schema.license=GPL-2.0 org.label-schema.vcs-url=https://github.com/rocker-org/rocker-versioned org.label-schema.vendor=Rocker0 B
7ENV R_VERSION=4.0.30 B
8ENV TERM=xterm0 B
9ENV LC_ALL=en_US.UTF-80 B
10ENV LANG=en_US.UTF-80 B
11ENV R_HOME=/usr/local/lib/R0 B
12ENV CRAN=https://packagemanager.rstudio.com/cran/__linux__/focal/2021-02-170 B
13ENV TZ=Etc/UTC0 B
14COPY dir:6e8d750f013043e6a1719d67dfd1971aa03ca2c0ee504cfd604b5f5473a844ca in /rocker_scripts 20.73 KB
15/bin/sh -c /rocker_scripts/install_R.sh282.84 MB
16CMD ["R"]0 B
17LABEL org.label-schema.license=GPL-2.0 org.label-schema.vcs-url=https://github.com/rocker-org/rocker-versioned org.label-schema.vendor=Rocker0 B
18ENV S6_VERSION=v2.1.0.20 B
19ENV RSTUDIO_VERSION=latest0 B
20ENV PATH=/usr/lib/rstudio-server/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
21/bin/sh -c /rocker_scripts/install_rstudio.sh229.23 MB
22/bin/sh -c /rocker_scripts/install_pandoc.sh197.33 KB
23EXPOSE 87870 B
24CMD ["/init"]0 B
25ARG BIOCONDUCTOR_VERSION=3.120 B
26ARG BIOCONDUCTOR_PATCH=320 B
27ARG BIOCONDUCTOR_DOCKER_VERSION=3.12.320 B
28LABEL name=bioconductor/bioconductor_docker version=3.12.32 url=https://github.com/Bioconductor/bioconductor_docker0 B
29|3 BIOCONDUCTOR_DOCKER_VERSION=3.12.32 BIOCONDUCTOR_PATCH=32 BIOCONDUCTOR_VERSION=3.12 /bin/sh233 B
30|3 BIOCONDUCTOR_DOCKER_VERSION=3.12.32 BIOCONDUCTOR_PATCH=32 BIOCONDUCTOR_VERSION=3.12 /bin/sh211 B
31ENV DEBIAN_FRONTEND=noninteractive0 B
32|3 BIOCONDUCTOR_DOCKER_VERSION=3.12.32 BIOCONDUCTOR_PATCH=32 BIOCONDUCTOR_VERSION=3.12 /bin/sh579.99 MB
33|3 BIOCONDUCTOR_DOCKER_VERSION=3.12.32 BIOCONDUCTOR_PATCH=32 BIOCONDUCTOR_VERSION=3.12 /bin/sh173.94 MB
34|3 BIOCONDUCTOR_DOCKER_VERSION=3.12.32 BIOCONDUCTOR_PATCH=32 BIOCONDUCTOR_VERSION=3.12 /bin/sh5.77 MB
35|3 BIOCONDUCTOR_DOCKER_VERSION=3.12.32 BIOCONDUCTOR_PATCH=32 BIOCONDUCTOR_VERSION=3.12 /bin/sh262 B
36ADD file ... in /tmp/ 253 B
37|3 BIOCONDUCTOR_DOCKER_VERSION=3.12.32 BIOCONDUCTOR_PATCH=32 BIOCONDUCTOR_VERSION=3.12 /bin/sh64.01 MB
38|3 BIOCONDUCTOR_DOCKER_VERSION=3.12.32 BIOCONDUCTOR_PATCH=32 BIOCONDUCTOR_VERSION=3.12 /bin/sh340 B
39ENV LIBSBML_CFLAGS=-I/usr/include0 B
40ENV LIBSBML_LIBS=-lsbml0 B
41ENV BIOCONDUCTOR_DOCKER_VERSION=3.12.320 B
42ENV BIOCONDUCTOR_VERSION=3.120 B
43CMD ["/init"]0 B
44MAINTAINER Nathan Sheffield <[email protected]>0 B
45/bin/sh -c Rscript -e 'install.packages("optigrab")'83.72 KB
46/bin/sh -c Rscript -e 'install.packages("devtools")'406.44 KB
47/bin/sh -c Rscript -e 'install.packages("pepr")'4.19 MB
48/bin/sh -c Rscript -e 'install.packages("BiocManager")'93.23 KB
49/bin/sh -c Rscript -e 'BiocManager::install("GenomicRanges")'23.09 MB
50/bin/sh -c Rscript -e 'BiocManager::install("Biostrings")'13.87 MB
51/bin/sh -c Rscript -e "devtools::install_github('databio/GenomicDistributions')"18.47 MB
52/bin/sh -c Rscript -e "install.packages('http://big.databio.org/GenomicDistributionsData/GenomicDistributionsData_0.0.2.tar.gz',92 B
53/bin/sh -c git clone https://github.com/databio/peppro.git62.49 MB
54/bin/sh -c cd peppro &&22.53 MB
55/bin/sh -c rm -rf peppro96 B
56/bin/sh -c git clone -b33.42 MB
57/bin/sh -c cd pepatac &&1.49 MB
58/bin/sh -c rm -rf pepatac97 B

Command

ADD file:b2342c7e6665d5ff3850d4f04e2521d1851eb2054f9a8d56fcf4e7c314b9f20e in /