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databio/rpipe:0.2.1

Manifest digest

sha256:68826d2e8cb474f4463f6395e3a5840b1959a402e1da0f719fd4de9796bbb6a5

OS/ARCH

linux/amd64

Compressed size

1.56 GB

Last pushed

almost 6 years by jpsmith5

Type

Image

Manifest digest

sha256:68826d2e8cb474f4463f6395e3a5840b1959a402e1da0f719fd4de9796bbb6a5

Image Layers

Image Layers

1ADD file ... in / 27.23 MB
2/bin/sh -c [ -z "$(apt-get31.56 KB
3/bin/sh -c set -xe &&844 B
4/bin/sh -c mkdir -p /run/systemd161 B
5CMD ["/bin/bash"]0 B
6LABEL org.label-schema.license=GPL-2.0 org.label-schema.vcs-url=https://github.com/rocker-org/rocker-versioned org.label-schema.vendor=Rocker0 B
7ENV R_VERSION=4.0.30 B
8ENV TERM=xterm0 B
9ENV LC_ALL=en_US.UTF-80 B
10ENV LANG=en_US.UTF-80 B
11ENV R_HOME=/usr/local/lib/R0 B
12ENV CRAN=https://packagemanager.rstudio.com/all/__linux__/focal/latest0 B
13ENV TZ=Etc/UTC0 B
14COPY dir:35a765f8360884ad4e297be8bf26ba0a818267730ae36d55015bccfedb81e938 in /rocker_scripts 19.12 KB
15/bin/sh -c /rocker_scripts/install_R.sh276.36 MB
16CMD ["R"]0 B
17LABEL org.label-schema.license=GPL-2.0 org.label-schema.vcs-url=https://github.com/rocker-org/rocker-versioned org.label-schema.vendor=Rocker0 B
18ENV S6_VERSION=v1.21.7.00 B
19ENV RSTUDIO_VERSION=latest0 B
20ENV PATH=/usr/lib/rstudio-server/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
21/bin/sh -c /rocker_scripts/install_rstudio.sh225.32 MB
22/bin/sh -c /rocker_scripts/install_pandoc.sh187.57 KB
23EXPOSE 87870 B
24CMD ["/init"]0 B
25ARG BIOCONDUCTOR_DOCKER_VERSION=3.12.280 B
26LABEL name=bioconductor/bioconductor_docker version=3.12.28 url=https://github.com/Bioconductor/bioconductor_docker0 B
27|1 BIOCONDUCTOR_DOCKER_VERSION=3.12.28 /bin/sh -c rm231 B
28|1 BIOCONDUCTOR_DOCKER_VERSION=3.12.28 /bin/sh -c dpkg211 B
29ENV DEBIAN_FRONTEND=noninteractive0 B
30|1 BIOCONDUCTOR_DOCKER_VERSION=3.12.28 /bin/sh -c apt-get572.87 MB
31|1 BIOCONDUCTOR_DOCKER_VERSION=3.12.28 /bin/sh -c apt-get173.42 MB
32|1 BIOCONDUCTOR_DOCKER_VERSION=3.12.28 /bin/sh -c apt-get5.47 MB
33|1 BIOCONDUCTOR_DOCKER_VERSION=3.12.28 /bin/sh -c cd6.59 MB
34|1 BIOCONDUCTOR_DOCKER_VERSION=3.12.28 /bin/sh -c echo496 B
35ADD file ... in /tmp/ 253 B
36|1 BIOCONDUCTOR_DOCKER_VERSION=3.12.28 /bin/sh -c R52.55 MB
37|1 BIOCONDUCTOR_DOCKER_VERSION=3.12.28 /bin/sh -c echo306 B
38CMD ["/init"]0 B
39MAINTAINER Nathan Sheffield <[email protected]>0 B
40/bin/sh -c Rscript -e 'install.packages("devtools")'330.27 KB
41/bin/sh -c Rscript -e 'install.packages("pepr")'4.17 MB
42/bin/sh -c Rscript -e 'install.packages("BiocManager")'93.24 KB
43/bin/sh -c Rscript -e 'BiocManager::install("GenomicRanges")'23.1 MB
44/bin/sh -c Rscript -e 'BiocManager::install("Biostrings")'13.87 MB
45/bin/sh -c git clone https://github.com/databio/GenomicDistributions.git6.11 MB
46/bin/sh -c Rscript -e 'devtools::install(file.path("GenomicDistributions/"),67.25 MB
47/bin/sh -c rm -rf GenomicDistributions110 B
48/bin/sh -c git clone https://github.com/databio/GenomicDistributionsData.git69.46 KB
49/bin/sh -c Rscript -e 'devtools::install(file.path("GenomicDistributionsData/"),42.94 MB
50/bin/sh -c rm -rf GenomicDistributionsData114 B
51/bin/sh -c git clone https://github.com/databio/peppro.git62.34 MB
52/bin/sh -c cd peppro &&603.41 KB
53/bin/sh -c rm -rf peppro96 B
54/bin/sh -c git clone https://github.com/databio/pepatac.git32.8 MB
55/bin/sh -c cd pepatac &&1.45 MB
56/bin/sh -c rm -rf pepatac97 B

Command

ADD file:b2342c7e6665d5ff3850d4f04e2521d1851eb2054f9a8d56fcf4e7c314b9f20e in /