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databio/rpipe:0.1.0

Manifest digest

sha256:8d42eb00175459fdc62538969d2ffb8f5404624928fe2490d7cfc2cac2d0bff1

OS/ARCH

linux/amd64

Compressed size

1.37 GB

Last pushed

almost 6 years by jpsmith5

Type

Image

Manifest digest

sha256:8d42eb00175459fdc62538969d2ffb8f5404624928fe2490d7cfc2cac2d0bff1

Image Layers

Image Layers

1ADD file ... in / 25.45 MB
2/bin/sh -c [ -z "$(apt-get34.54 KB
3/bin/sh -c set -xe &&844 B
4/bin/sh -c mkdir -p /run/systemd163 B
5CMD ["/bin/bash"]0 B
6LABEL org.label-schema.license=GPL-2.0 org.label-schema.vcs-url=https://github.com/rocker-org/rocker-versioned org.label-schema.vendor=Rocker0 B
7ENV R_VERSION=4.0.00 B
8ENV TERM=xterm0 B
9ENV LC_ALL=en_US.UTF-80 B
10ENV LANG=en_US.UTF-80 B
11ENV R_HOME=/usr/local/lib/R0 B
12ENV CRAN=https://packagemanager.rstudio.com/all/__linux__/bionic/2910 B
13ENV TZ=UTC0 B
14COPY dir:e96ba3e982c73d48eac537622cd2d20d6f838789ce782c79ff8adb70a336b982 in /rocker_scripts 14.93 KB
15/bin/sh -c /rocker_scripts/install_R.sh276.44 MB
16CMD ["R"]0 B
17LABEL org.label-schema.license=GPL-2.0 org.label-schema.vcs-url=https://github.com/rocker-org/rocker-versioned org.label-schema.vendor=Rocker0 B
18ENV S6_VERSION=v1.21.7.00 B
19ENV RSTUDIO_VERSION=latest0 B
20ENV PATH=/usr/lib/rstudio-server/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
21/bin/sh -c /rocker_scripts/install_rstudio.sh251.68 MB
22/bin/sh -c /rocker_scripts/install_pandoc.sh160.69 KB
23EXPOSE 87870 B
24CMD ["/init"]0 B
25ARG BIOCONDUCTOR_DOCKER_VERSION=3.11.110 B
26LABEL name=bioconductor/bioconductor_docker version=3.11.11 url=https://github.com/Bioconductor/bioconductor_docker0 B
27|1 BIOCONDUCTOR_DOCKER_VERSION=3.11.11 /bin/sh -c echo1.65 KB
28|1 BIOCONDUCTOR_DOCKER_VERSION=3.11.11 /bin/sh -c rm231 B
29|1 BIOCONDUCTOR_DOCKER_VERSION=3.11.11 /bin/sh -c dpkg212 B
30ENV DEBIAN_FRONTEND=noninteractive0 B
31|1 BIOCONDUCTOR_DOCKER_VERSION=3.11.11 /bin/sh -c apt-get456.84 MB
32|1 BIOCONDUCTOR_DOCKER_VERSION=3.11.11 /bin/sh -c apt-get181.28 MB
33|1 BIOCONDUCTOR_DOCKER_VERSION=3.11.11 /bin/sh -c apt-get811.03 KB
34|1 BIOCONDUCTOR_DOCKER_VERSION=3.11.11 /bin/sh -c cd10.89 MB
35COPY file:54b54c473716aa80847aeb049bba79a7954c47724534361a3e434a6985acd384 in /etc/services.d/xvfb/run 225 B
36|1 BIOCONDUCTOR_DOCKER_VERSION=3.11.11 /bin/sh -c echo506 B
37ADD file ... in /tmp/ 254 B
38|1 BIOCONDUCTOR_DOCKER_VERSION=3.11.11 /bin/sh -c R50.07 MB
39CMD ["/init"]0 B
40MAINTAINER Nathan Sheffield <[email protected]>0 B
41/bin/sh -c Rscript -e 'install.packages("devtools")'341.62 KB
42/bin/sh -c Rscript -e 'devtools::install_github("pepkit/pepr")'3.45 MB
43/bin/sh -c Rscript -e 'install.packages("BiocManager")'93.2 KB
44/bin/sh -c Rscript -e 'BiocManager::install("GenomicRanges")'22.8 MB
45/bin/sh -c Rscript -e 'BiocManager::install("Biostrings")'13.84 MB
46/bin/sh -c Rscript -e 'devtools::install_github("databio/GenomicDistributions")'17.87 MB
47/bin/sh -c Rscript -e 'install.packages("http://big.databio.org/GenomicDistributionsData/GenomicDistributionsData_0.0.1.tar.gz",216 B
48/bin/sh -c git clone https://github.com/databio/peppro.git62.08 MB
49/bin/sh -c cd peppro/PEPPROr/ &&599.2 KB
50/bin/sh -c rm -rf peppro96 B
51/bin/sh -c git clone https://github.com/databio/pepatac.git30.39 MB
52/bin/sh -c cd pepatac/PEPATACr &&1.27 MB
53/bin/sh -c rm -rf pepatac97 B

Command

ADD file:1e8d02626176dc8141df3c0a1365774ce73d79934654fe24a4b1e7f173108232 in /