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databio/refgenie:latest

Manifest digest

sha256:aded5b73b59323f4f37724acb6adce175649aacd7780dac991aa336f7c1c8efc

OS/ARCH

linux/amd64

Compressed size

357.26 MB

Last pushed

about 7 years by nsheff

Type

Image

Manifest digest

sha256:aded5b73b59323f4f37724acb6adce175649aacd7780dac991aa336f7c1c8efc

Image Layers

Image Layers

1ADD file ... in / 30.19 MB
2/bin/sh -c set -xe &&847 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*468 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'849 B
5/bin/sh -c mkdir -p /run/systemd163 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Nathan Sheffield <[email protected]>0 B
8/bin/sh -c apt-get update &&68.28 MB
9/bin/sh -c apt-get install -y110.14 MB
10/bin/sh -c apt-get install -y555.54 KB
11/bin/sh -c apt-get install -y607.32 KB
12/bin/sh -c wget -O ~/htslib.tar.bz2958.86 KB
13/bin/sh -c tar -xf ~/htslib.tar.bz21.04 MB
14/bin/sh -c cd /htslib-1.3.2 15.66 MB
15/bin/sh -c wget -O ~/samtools.bz23.83 MB
16/bin/sh -c tar -xf ~/samtools.bz24.62 MB
17/bin/sh -c cd /samtools-1.3.1 &&11.14 MB
18ENV PATH=/samtools-1.3.1:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
19/bin/sh -c apt-get install -y613.15 KB
20/bin/sh -c wget -O ~/bowtie.zip29.51 MB
21/bin/sh -c unzip ~/bowtie.zip29.88 MB
22ENV PATH=/bowtie2-2.3.0:/samtools-1.3.1:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
23/bin/sh -c wget -O ~/bismark.zip1.73 MB
24/bin/sh -c unzip ~/bismark.zip1.72 MB
25ENV PATH=/Bismark-0.17.0:/bowtie2-2.3.0:/samtools-1.3.1:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
26/bin/sh -c wget -O ~/hisat.zip3.69 MB
27/bin/sh -c unzip ~/hisat.zip3.85 MB
28/bin/sh -c cd hisat2-2.0.5 &&12.14 MB
29ENV PATH=/hisat2-2.0.5:/Bismark-0.17.0:/bowtie2-2.3.0:/samtools-1.3.1:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
30/bin/sh -c wget -O ~/kallisto.tar.gz10.39 MB
31/bin/sh -c tar -xf ~/kallisto.tar.gz10.61 MB
32ENV PATH=/kallisto_linux-v0.43.0:/hisat2-2.0.5:/Bismark-0.17.0:/bowtie2-2.3.0:/samtools-1.3.1:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
33ADD file ... in bin/epilog_indexer.py 18.83 KB
34/bin/sh -c pip install --user1.93 MB
35ADD file ... in bin/twoBitToFa 1.76 MB
36/bin/sh -c apt-get install -y493.19 KB
37/bin/sh -c wget -O ~/bwa-0.7.17.tar.bz2186.9 KB
38/bin/sh -c tar -xf ~/bwa-0.7.17.tar.bz2228.3 KB
39/bin/sh -c cd /bwa-0.7.17 &&1.58 MB
40ENV PATH=/bwa-0.7.17:/kallisto_linux-v0.43.0:/hisat2-2.0.5:/Bismark-0.17.0:/bowtie2-2.3.0:/samtools-1.3.1:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

Command

ADD file:4bb62bb05874068552efeb626f8b31b4a29f26d6cc8c7d7fc7ab4c1fdece957a in /