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databio/peppro:0.10.0

Manifest digest

sha256:7e3d88acd0a802358691a500d9c271502b68bf6d093fac4920c9f2cfd03caf07

OS/ARCH

linux/amd64

Compressed size

1.86 GB

Last pushed

over 4 years by jpsmith5

Type

Image

Manifest digest

sha256:7e3d88acd0a802358691a500d9c271502b68bf6d093fac4920c9f2cfd03caf07

Image Layers

Image Layers

1ADD file ... in / 27.25 MB
2CMD ["bash"]0 B
3ARG QEMU_ARCH0 B
4COPY . /bd_build # buildkit14.85 KB
5RUN |1 QEMU_ARCH= /bin/sh -c53.83 MB
6ENV DEBIAN_FRONTEND=teletype LANG=en_US.UTF-8 LANGUAGE=en_US:en LC_ALL=en_US.UTF-80 B
7CMD ["/sbin/my_init"]0 B
8LABEL maintainer=Jason Smith [email protected]0 B
9LABEL version=0.9.110 B
10CMD ["/sbin/my_init"]0 B
11RUN /bin/sh -c add-apt-repository ppa:deadsnakes/ppa38.86 MB
12RUN /bin/sh -c apt-get update731.07 MB
13RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get103.34 MB
14RUN /bin/sh -c python3.8 -m4.36 MB
15RUN /bin/sh -c pip install118.33 MB
16RUN /bin/sh -c apt update184.2 KB
17RUN /bin/sh -c apt-key adv243.82 KB
18RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get78.14 MB
19RUN /bin/sh -c Rscript -e36.08 MB
20RUN /bin/sh -c Rscript -e170.76 MB
21WORKDIR /home/src/146 B
22RUN /bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.12/htslib-1.12.tar.bz258.38 MB
23WORKDIR /home/src/32 B
24RUN /bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.12/samtools-1.12.tar.bz242.38 MB
25RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get3.8 MB
26WORKDIR /home/src/32 B
27RUN /bin/sh -c wget -O54.64 MB
28WORKDIR /home/src/32 B
29RUN /bin/sh -c wget https://github.com/shenwei356/seqkit/releases/download/v0.10.1/seqkit_linux_amd64.tar.gz6.32 MB
30WORKDIR /home/src/32 B
31RUN /bin/sh -c git clone18.02 MB
32WORKDIR /home/src/32 B
33RUN /bin/sh -c git clone319.51 KB
34WORKDIR /home/src/32 B
35RUN /bin/sh -c wget https://github.com/smithlabcode/preseq/releases/download/v3.1.2/preseq-3.1.2.tar.gz13.65 MB
36WORKDIR /home/tools/148 B
37RUN /bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/wigToBigWig4.4 MB
38WORKDIR /home/src/32 B
39RUN /bin/sh -c wget -O92.56 KB
40WORKDIR /home/src/32 B
41RUN /bin/sh -c git clone601.81 KB
42WORKDIR /home/tools/32 B
43RUN /bin/sh -c wget https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.9.zip19.39 MB
44WORKDIR /home/tools/32 B
45RUN /bin/sh -c git clone92.74 MB
46WORKDIR /home/tools/32 B
47RUN /bin/sh -c git clone7.17 MB
48WORKDIR /home/tools/32 B
49RUN /bin/sh -c wget http://genometools.org/pub/genometools-1.6.1.tar.gz107.61 MB
50WORKDIR /home/tools/32 B
51RUN /bin/sh -c wget -O111.64 MB
52ENV PATH=/home/tools/bin:/home/tools/:/home/tools/bin/kentUtils/:/home/src/bowtie2-2.4.2:/home/src/skewer:/home/src/samtools-1.12:/home/src/htslib-1.12:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin R_LIBS_USER=/usr/local/lib/R/site-library/ PYTHONPATH=/usr/local/lib/python3.8/dist-packages:0 B
53RUN /bin/sh -c update-alternatives --install3.32 KB
54WORKDIR /home/32 B
55CMD ["/bin/bash"]0 B
56RUN /bin/sh -c apt-get clean1.05 KB

Command

ADD file:d2abf27fe2e8b0b5f4da68c018560c73e11c53098329246e3e6fe176698ef941 in /