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databio/pepatac:0.9.15

Manifest digest

sha256:054c2c0e0e91aa0cc39936404c118e2b2f72740a29eacd158ac6ff20dc2dfdd3

OS/ARCH

linux/amd64

Compressed size

2.54 GB

Last pushed

over 5 years by jpsmith5

Type

Image

Manifest digest

sha256:054c2c0e0e91aa0cc39936404c118e2b2f72740a29eacd158ac6ff20dc2dfdd3

Image Layers

Image Layers

1ADD file ... in / 27.22 MB
2/bin/sh -c set -xe &&851 B
3/bin/sh -c [ -z "$(apt-get0 B
4/bin/sh -c mkdir -p /run/systemd187 B
5CMD ["/bin/bash"]0 B
6ARG QEMU_ARCH0 B
7ADD file ... in /usr/bin 174 B
8COPY dir:c89d0536818f2fcc6080de5268c7c23b20797ceeb53e9807455d80fa2dd8df7b in /bd_build 14.98 KB
9|1 QEMU_ARCH=amd64 /bin/sh -c /bd_build/prepare.sh52.73 MB
10ENV DEBIAN_FRONTEND=teletype LANG=en_US.UTF-8 LANGUAGE=en_US:en0 B
11CMD ["/sbin/my_init"]0 B
12LABEL maintainer=Jason Smith [email protected]0 B
13LABEL version=0.9.150 B
14CMD ["/sbin/my_init"]0 B
15RUN /bin/sh -c add-apt-repository ppa:deadsnakes/ppa36.84 MB
16RUN /bin/sh -c apt-get update761.28 MB
17RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get99.17 MB
18RUN /bin/sh -c python3.8 -m4.34 MB
19RUN /bin/sh -c pip install31.71 MB
20RUN /bin/sh -c pip install77.97 MB
21RUN /bin/sh -c apt update222.79 KB
22RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get62.79 MB
23RUN /bin/sh -c Rscript -e199.94 MB
24RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get3.82 MB
25WORKDIR /home/tools/148 B
26RUN /bin/sh -c wget https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.9.zip19.39 MB
27WORKDIR /home/src/146 B
28RUN /bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.12/htslib-1.12.tar.bz258.34 MB
29WORKDIR /home/tools/32 B
30RUN /bin/sh -c pip install6.49 MB
31WORKDIR /home/src/32 B
32RUN /bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.12/samtools-1.12.tar.bz242.37 MB
33WORKDIR /home/tools/32 B
34RUN /bin/sh -c wget https://github.com/smithlabcode/preseq/releases/download/v3.1.2/preseq-3.1.2.tar.gz13.65 MB
35WORKDIR /home/src/32 B
36RUN /bin/sh -c wget -O54.64 MB
37WORKDIR /home/tools/32 B
38RUN /bin/sh -c git clone508.99 KB
39WORKDIR /home/tools/32 B
40RUN /bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig15.83 MB
41WORKDIR /home/src/32 B
42RUN /bin/sh -c git clone370.39 KB
43WORKDIR /home/src/32 B
44RUN /bin/sh -c wget -O2.3 MB
45WORKDIR /home/src/32 B
46RUN /bin/sh -c pip install549.92 KB
47RUN /bin/sh -c wget https://github.com/Boyle-Lab/F-Seq2/archive/master.zip68.16 MB
48WORKDIR /home/tools/32 B
49RUN /bin/sh -c wget http://genometools.org/pub/genometools-1.6.1.tar.gz107.61 MB
50WORKDIR /home/tools/32 B
51RUN /bin/sh -c git clone739.56 KB
52WORKDIR /home/tools/bin166 B
53RUN /bin/sh -c wget https://github.com/LiuLabUB/HMMRATAC/releases/download/1.2.10/HMMRATAC_V1.2.10_exe.jar26.14 MB
54WORKDIR /home/tools/bin32 B
55RUN /bin/sh -c wget http://homer.ucsd.edu/homer/configureHomer.pl55.84 MB
56WORKDIR /home/tools/32 B
57RUN /bin/sh -c git clone609.68 MB
58WORKDIR /home/tools/bin32 B
59RUN /bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/2.25.2/picard.jar15.97 MB
60WORKDIR /home/tools/32 B
61RUN /bin/sh -c wget -O145.67 MB
62WORKDIR /home/src/32 B
63RUN /bin/sh -c wget https://github.com/usadellab/Trimmomatic/files/5854859/Trimmomatic-0.39.zip260.57 KB
64WORKDIR /home/src/32 B
65RUN /bin/sh -c git clone153.79 KB
66ENV JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/bin0 B
67RUN /bin/sh -c cd /home/src/F-seq226.31 KB
68ENV PATH=/home/tools/bin:/home/tools/:/home/tools/bin/kentUtils/:/home/src/bowtie2-2.4.2:/home/src/skewer:/home/src/samtools-1.12:/home/src/Trimmomatic-0.39/:/home/src/htslib-1.12:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/bin TRIMMOMATIC=/home/src/Trimmomatic-0.39/trimmomatic-0.39.jar PICARD=/home/tools/bin/picard.jar HMMRATAC=/home/tools/bin/HMMRATAC_V1.2.10_exe.jar0 B
69RUN /bin/sh -c echo 'alias1.54 KB
70RUN /bin/sh -c update-alternatives --install4.9 KB
71WORKDIR /home/32 B
72CMD ["/bin/bash"]0 B
73RUN /bin/sh -c apt-get clean1.02 KB

Command

ADD file:5c44a80f547b7d68b550b0e64aef898b361666857abf9a5c8f3f8d0567b8e8e4 in /