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databio/pepatac:0.10.0

Manifest digest

sha256:4f24ece7dfac577aaf420c9f1e7706d80d7302591f9d898a080e941625c5dee9

OS/ARCH

linux/amd64

Compressed size

2.53 GB

Last pushed

about 5 years by jpsmith5

Type

Image

Manifest digest

sha256:4f24ece7dfac577aaf420c9f1e7706d80d7302591f9d898a080e941625c5dee9

Image Layers

Image Layers

1ADD file ... in / 27.22 MB
2/bin/sh -c set -xe &&851 B
3/bin/sh -c [ -z "$(apt-get0 B
4/bin/sh -c mkdir -p /run/systemd187 B
5CMD ["/bin/bash"]0 B
6ARG QEMU_ARCH0 B
7ADD file ... in /usr/bin 172 B
8COPY dir:691a3f494e31f086cc5c74b6e50a71209628b494d4d714f9fb46712b6e4ce7c5 in /bd_build 14.91 KB
9|1 QEMU_ARCH=amd64 /bin/sh -c /bd_build/prepare.sh52.73 MB
10ENV DEBIAN_FRONTEND=teletype LANG=en_US.UTF-8 LANGUAGE=en_US:en0 B
11CMD ["/sbin/my_init"]0 B
12LABEL maintainer=Jason Smith [email protected]0 B
13LABEL version=0.10.00 B
14CMD ["/sbin/my_init"]0 B
15RUN /bin/sh -c add-apt-repository ppa:deadsnakes/ppa37.82 MB
16RUN /bin/sh -c apt-get update712.9 MB
17RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get101.8 MB
18RUN /bin/sh -c python3.8 -m3.98 MB
19RUN /bin/sh -c pip install32.44 MB
20RUN /bin/sh -c pip install76.35 MB
21RUN /bin/sh -c apt update181.32 KB
22RUN /bin/sh -c apt-key adv232.65 KB
23RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get75.87 MB
24RUN /bin/sh -c Rscript -e201.35 MB
25RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get3.8 MB
26WORKDIR /home/tools/146 B
27RUN /bin/sh -c wget https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.9.zip19.39 MB
28WORKDIR /home/src/144 B
29RUN /bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.12/htslib-1.12.tar.bz258.34 MB
30WORKDIR /home/tools/32 B
31RUN /bin/sh -c pip install6.51 MB
32WORKDIR /home/src/32 B
33RUN /bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.12/samtools-1.12.tar.bz242.37 MB
34WORKDIR /home/tools/32 B
35RUN /bin/sh -c wget https://github.com/smithlabcode/preseq/releases/download/v3.1.2/preseq-3.1.2.tar.gz13.65 MB
36WORKDIR /home/src/32 B
37RUN /bin/sh -c wget -O54.64 MB
38WORKDIR /home/tools/32 B
39RUN /bin/sh -c git clone508.97 KB
40WORKDIR /home/tools/32 B
41RUN /bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig15.85 MB
42WORKDIR /home/src/32 B
43RUN /bin/sh -c git clone370.39 KB
44WORKDIR /home/src/32 B
45RUN /bin/sh -c wget -O2.3 MB
46WORKDIR /home/src/32 B
47RUN /bin/sh -c pip install499.41 KB
48RUN /bin/sh -c wget https://github.com/Boyle-Lab/F-Seq2/archive/master.zip69.28 MB
49WORKDIR /home/tools/32 B
50RUN /bin/sh -c wget http://genometools.org/pub/genometools-1.6.1.tar.gz107.61 MB
51WORKDIR /home/tools/32 B
52RUN /bin/sh -c git clone739.55 KB
53WORKDIR /home/tools/bin167 B
54RUN /bin/sh -c wget https://github.com/LiuLabUB/HMMRATAC/releases/download/1.2.10/HMMRATAC_V1.2.10_exe.jar26.14 MB
55WORKDIR /home/tools/bin32 B
56RUN /bin/sh -c wget http://homer.ucsd.edu/homer/configureHomer.pl55.84 MB
57WORKDIR /home/tools/32 B
58RUN /bin/sh -c git clone610.24 MB
59WORKDIR /home/tools/bin32 B
60RUN /bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/2.25.2/picard.jar15.97 MB
61WORKDIR /home/tools/32 B
62RUN /bin/sh -c wget -O158.76 MB
63WORKDIR /home/src/32 B
64RUN /bin/sh -c wget https://github.com/usadellab/Trimmomatic/files/5854859/Trimmomatic-0.39.zip260.56 KB
65WORKDIR /home/src/32 B
66RUN /bin/sh -c git clone156.66 KB
67ENV JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/bin0 B
68RUN /bin/sh -c cd /home/src/F-seq226.56 KB
69ENV PATH=/home/tools/bin:/home/tools/:/home/tools/bin/kentUtils/:/home/src/bowtie2-2.4.2:/home/src/skewer:/home/src/samtools-1.12:/home/src/Trimmomatic-0.39/:/home/src/htslib-1.12:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/bin TRIMMOMATIC=/home/src/Trimmomatic-0.39/trimmomatic-0.39.jar PICARD=/home/tools/bin/picard.jar HMMRATAC=/home/tools/bin/HMMRATAC_V1.2.10_exe.jar0 B
70RUN /bin/sh -c echo 'alias1.54 KB
71RUN /bin/sh -c update-alternatives --install4.52 KB
72WORKDIR /home/32 B
73CMD ["/bin/bash"]0 B
74RUN /bin/sh -c apt-get clean1.05 KB

Command

ADD file:5c44a80f547b7d68b550b0e64aef898b361666857abf9a5c8f3f8d0567b8e8e4 in /