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ctomlins/variant_vcf_toolkit:latest

Multi-platform
Index digest

sha256:7b27a55d4cdb222f6814ddfacbf26e437bb18a75038e7088b93e3ef484de728f

OS/ARCH

Compressed size

403.24 MB

Last pushed

4 months by ctomlins

Type

Image

Manifest digest

sha256:22683ab5b84f35061736502efe0984402a5c62e01ae551e1770ac507db591a34

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.version=24.040 B
4ADD file ... in / 27.54 MB
5CMD ["/bin/bash"]0 B
6ARG DEBIAN_FRONTEND=noninteractive0 B
7ARG HTSLIB_VERSION=1.23.10 B
8ARG SAMTOOLS_VERSION=1.23.10 B
9ARG BCFTOOLS_VERSION=1.23.10 B
10ARG VCFTOOLS_VERSION=0.1.170 B
11ARG RTGTOOLS_VERSION=3.130 B
12ARG TRUVARI_VERSION=5.4.00 B
13ARG PYSAM_VERSION=0.23.30 B
14ENV TZ=Etc/UTC LANG=C.UTF-8 LC_ALL=C.UTF-8 PYTHONDONTWRITEBYTECODE=10 B
15SHELL [/bin/bash -o pipefail -c]0 B
16RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.1267.97 MB
17RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.112.56 MB
18RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.11.69 MB
19RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.13.89 MB
20RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.15.54 MB
21RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.18.62 MB
22RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.175.38 MB
23COPY vcf_compare_wrapper.py /usr/local/bin/vcf_compare_wrapper.py # buildkit7.02 KB
24COPY filter_normalize_variant_vcf.sh /usr/local/bin/filter_normalize_variant_vcf.sh # buildkit5.37 KB
25COPY integrate_pangenie_deepvariant_rtg.sh /usr/local/bin/integrate_pangenie_deepvariant_rtg.sh # buildkit8.39 KB
26COPY compare_tumor_normal_pangenie_vcfs.sh /usr/local/bin/compare_tumor_normal_pangenie_vcfs.sh # buildkit4.6 KB
27COPY compile_integration_variant_metrics.py /usr/local/bin/compile_integration_variant_metrics.py # buildkit2.9 KB
28COPY compile_updated_graph_integration_metrics.py /usr/local/bin/compile_updated_graph_integration_metrics.py # buildkit3.4 KB
29COPY convert-to-biallelic.py /usr/local/bin/convert-to-biallelic.py # buildkit1.6 KB
30RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.128.58 KB
31RUN |8 DEBIAN_FRONTEND=noninteractive HTSLIB_VERSION=1.23.1 SAMTOOLS_VERSION=1.23.132 B
32WORKDIR /work94 B
33CMD ["/bin/bash"]0 B

Command

 ARG RELEASE