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ctomlins/minimap2_freebayes_deepvariant:latest

Index digest

sha256:74a8962fb578b0e266ec06b2718a2ae38c28ec658201a5317f3aaa7a2d3be10b

OS/ARCH

linux/amd64

Compressed size

2.5 GB

Last pushed

6 months by ctomlins

Type

Image

Manifest digest

sha256:45783c903195ff7e842c92eaa04e7b39626f1a29c5aabbfa953c98217a91c907

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 29.04 MB
6CMD ["/bin/bash"]0 B
7ENV DV_BIN_PATH=/opt/deepvariant/bin0 B
8RUN /bin/sh -c apt-get -y145.87 MB
9COPY /opt/conda/envs/bio/bin /opt/conda/envs/bio/bin # buildkit5.07 MB
10COPY /opt/conda/envs/bio/lib /opt/conda/envs/bio/lib # buildkit44.95 MB
11RUN /bin/sh -c echo "Acquire::http::proxy186 B
12WORKDIR /opt/32 B
13COPY /usr/local/lib/python3.10/dist-packages /usr/local/lib/python3.10/dist-packages # buildkit1.02 GB
14COPY /opt/deepvariant/bazel-bin/licenses.zip . # buildkit21.98 KB
15COPY /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/make_examples.zip /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/call_variants.zip /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/postprocess_variants.zip /opt/deepvariant/bazel-out/k8-opt/bin/deepvariant/vcf_stats_report.zip94.25 MB
16RUN /bin/sh -c BASH_HEADER='#!/bin/bash' &&94.06 MB
17COPY /opt/models /opt/models # buildkit538.53 MB
18COPY /opt/smallmodels /opt/smallmodels # buildkit10.47 MB
19ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/deepvariant/bin:/opt/conda/envs/bio/bin0 B
20ENV TF_USE_LEGACY_KERAS=10 B
21WORKDIR /opt/deepvariant32 B
22CMD ["/opt/deepvariant/bin/run_deepvariant" "--help"]0 B
23USER root0 B
24ENV DEBIAN_FRONTEND=noninteractive0 B
25ARG SAMTOOLS_VER=1.230 B
26ARG BCFTOOLS_VER=1.230 B
27ARG HTSLIB_VER=1.230 B
28ARG MINIMAP2_VER=2.300 B
29ARG BEDTOOLS_VER=2.31.10 B
30ARG TARGETARCH=amd640 B
31RUN |6 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.23 HTSLIB_VER=1.23115.37 MB
32WORKDIR /tmp/build119 B
33RUN |6 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.23 HTSLIB_VER=1.2387.28 MB
34RUN |6 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.23 HTSLIB_VER=1.2326.87 MB
35RUN |6 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.23 HTSLIB_VER=1.2326.18 MB
36RUN |6 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.23 HTSLIB_VER=1.233.29 MB
37RUN |6 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.23 HTSLIB_VER=1.2393.24 MB
38COPY /opt/freebayes-conda /opt/freebayes-conda # buildkit203.05 MB
39ENV PATH=/opt/freebayes-conda/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/deepvariant/bin:/opt/conda/envs/bio/bin0 B
40ENV LD_LIBRARY_PATH=/opt/freebayes-conda/lib:/usr/local/lib:/usr/local/lib64:0 B
41COPY fastq_file_stats.py /usr/local/bin/fastq_file_stats.py # buildkit3.08 KB
42COPY compile_fastq_file_stats_by_library.py /usr/local/bin/compile_fastq_file_stats_by_library.py # buildkit2.38 KB
43RUN |6 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.23 HTSLIB_VER=1.234.78 KB
44RUN |6 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.23 HTSLIB_VER=1.231.24 KB
45RUN |6 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.23 HTSLIB_VER=1.23126 B
46RUN |6 SAMTOOLS_VER=1.23 BCFTOOLS_VER=1.23 HTSLIB_VER=1.23282 B
47WORKDIR /root32 B
48CMD ["/bin/bash"]0 B

Command

 ARG RELEASE