Sign inSign up

chrisamiller/genomic-analysis:0.4.0

Index digest

sha256:00e47e26ff1dc1bc3fd2301d6f8a85f18675ab6e17004574dd6089679fefd022

OS/ARCH

linux/amd64

Compressed size

2.42 GB

Last pushed

over 1 year by chrisamiller

Type

Image

Manifest digest

sha256:f8a49d7bec15dd1ba6130f2fb44e46d01ef0b917e30fd61c1291cbf8fbd4b4c4

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.17 MB
6CMD ["/bin/bash"]0 B
7LABEL org.label-schema.license=GPL-2.0 org.label-schema.vcs-url=https://github.com/rocker-org/r-ubuntu org.label-schema.vendor=Rocker Project0 B
8RUN /bin/sh -c useradd -s4.21 KB
9RUN /bin/sh -c apt-get update89.11 MB
10RUN /bin/sh -c echo "en_US.UTF-8845.55 KB
11ENV LC_ALL=en_US.UTF-80 B
12ENV LANG=en_US.UTF-80 B
13ENV DEBIAN_FRONTEND=noninteractive0 B
14ENV TZ=UTC0 B
15RUN /bin/sh -c apt-get update201.32 MB
16CMD ["bash"]0 B
17LABEL Image=for basic ad-hoc bioinformatic0 B
18RUN /bin/sh -c add-apt-repository ppa:c2d4u.team/c2d4u4.0+450.32 MB
19ADD rpackages.R /tmp/ # buildkit252 B
20RUN /bin/sh -c R -f140.72 MB
21RUN /bin/sh -c cd /tmp/64.18 KB
22RUN /bin/sh -c pip install594.24 MB
23COPY /usr/local/bin/samtools /usr/local/bin/samtools # buildkit317.3 KB
24COPY /usr/local/lib/libhts.so* /usr/local/lib/libtinfow.so* /usr/local/lib/ #1.8 MB
25COPY /usr/local/bin/bcftools /usr/local/bin/bcftools # buildkit576.62 KB
26COPY /usr/local/lib/libgsl.so* /usr/local/lib/ # buildkit3.75 MB
27COPY /bin/bam-readcount /bin/bam-readcount/ # buildkit2.23 MB
28COPY bam_readcount_helper.py /usr/bin/bam_readcount_helper.py # buildkit1.25 KB
29RUN /bin/sh -c cd /tmp15.99 MB
30COPY /usr/local/bin/vcftools /usr/local/bin/vcftools # buildkit404.64 KB
31RUN /bin/sh -c cd /opt9.67 MB
32RUN /bin/sh -c cd /opt706.45 MB
33ENV PATH=/opt/gatk-4.5.0.0:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
34COPY split_interval_list_helper.pl /usr/bin/split_interval_list_helper.pl # buildkit384 B
35RUN /bin/sh -c mkdir -p21.32 MB
36ADD utilities/* /usr/bin/ # buildkit1.48 KB
37RUN /bin/sh -c curl -sSL206.58 MB
38ENV PATH=/opt/gcloud/google-cloud-sdk/bin:/opt/gatk-4.5.0.0:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
39RUN /bin/sh -c ln -sf466.09 KB
40RUN /bin/sh -c dbus-uuidgen >/etc/machine-id159 B
41RUN /bin/sh -c ln -s241 B

Command

 ARG RELEASE